Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52290 531 / 0 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G24550 520 / 5e-179 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G24540 486 / 1e-167 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT4G34440 483 / 2e-164 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT2G18470 474 / 4e-161 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT3G18810 446 / 4e-149 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1) AT1G49270 435 / 4e-145 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1) AT1G23540 431 / 2e-143 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G70460 428 / 3e-142 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT5G38560 423 / 1e-140 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G183000 [exp] 833 / 0 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.018G081300 [exp] 541 / 0 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.005G124400 [exp] 482 / 8e-165 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.007G027000 [exp] 473 / 1e-160 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.004G153600 [exp] 468 / 1e-158 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.009G115200 [exp] 465 / 2e-157 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.006G242800 [exp] 439 / 3e-146 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.017G110400 [exp] 432 / 1e-143 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.008G189700 [exp] 429 / 3e-142 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011098 [exp] 559 / 0 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 543 / 0 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 536 / 0 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10024020 [exp] 467 / 4e-159 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10041734 [exp] 463 / 1e-157 AT2G18470 596 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10014318 [exp] 452 / 2e-156 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10026335 [exp] 449 / 4e-154 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10042327 [exp] 451 / 1e-151 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10040467 [exp] 439 / 4e-148 AT4G34440 501 / 7e-172 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10022129 [exp] 438 / 2e-146 AT3G24550 474 / 3e-159 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.003G053301.1 pacid=42786947 polypeptide=Potri.003G053301.1.p locus=Potri.003G053301 ID=Potri.003G053301.1.v4.1 annot-version=v4.1 ATGTCGTCTCCGGCTCCAGGAGTTTCTCCTGTCCCCAACAATTCCACCTCTCCGCCGCCAGTATCGAGCCTCACCTCTCCGCCTCCGCCTGACACAACTG TTTCTCAGGCACCGCCTCCGACGAACTCGAGTGGTGCTCTAGTGCCACCTCCACCGGCAGCAGGATCGAAAGCCCCGTCTTCGCCGGTACTTGCGGCGTT GATAGTAGGAGTAATATTAGGAGTGCTGGCAGGTGTGGGTATTTCTGTTTATGTGTACCGGAGGAAGAAGAGGAAGGAAGCGCAGAGATTATTGCTCGGT GGTCAACCTTCACAAGTGGCTAGCAAAGACGATGGCTTGCCACTGCATTGGCAGCCCAATATGGCTCCTGCTGCGGACAATAAAATTATGATGTGGCCGA AGCCCACTATTCCCCAAGGAGCTCCGCCGAATTACCAACTGCAACCGATGCTTGGTATTTTTGCTGAACAACCTTCTACAAGCAGCGGCATGGGCTCTGA TAAACAAGTTATATCACATACTTCTGGAATTTCTCTGGGATATTCACAGACTACTTTTACTTCTGAAGAACTAGCCATGGCGACTGATAATTTCTCCAAT GCCAACCTCCTTGGTCAGGGTGGTTTTGGTTACGTTCATAAGGGAATCCTTGCAAATGGTACAGTGGTTGCAATTAAGCAGCTTAAATCTGGGAGTGGAC AGGGAGAGCGTGAATTTCAGGCTGAGATTGAGATTATTAGCCGCGTACATCACCGACATCTTGTTTCATTGGTTGGATACTGCATTACTGGATCCCAAAG AATGCTTGTTTACGAGTTTGTACCCAACTACACCTTGGAATTTCATTTGCATGGAAATGGGAATCCCACCATGAGCTGGTCAACAAGAATGAGAATCGCA GTTGGCTCAGCGAAAGGACTGACATATCTGCATGAAGACTGCCAGCCTAAAATCATACATCGAGATATCAAGGCTGCTAATATTCTTATTGATCAGAGCT TCGAAGCAAAGGTTGCTGATTTTGGACTTGCCAGATATTCTTTAGATACTGAGACTCACGTCTCAACTCGAGTGATGGGGACTTTTGGTTATATGGCCCC AGAGTATGCCTCCTCTGGGAAGCTTACAGAGAAGTCAGATGTCTATTCCTTCGGTGTTGTGCTTCTAGAGTTGATCAGTGGGCGTCGGCCTGTTGATAGA ACTCAATCCTACATTGATGATAGCATAGTTGACTGGGCAAGGCCTTTGCTCAAACAAGCTTTGGAAGATAGCAACTATGATGCTGTTGTCGACCCAAAAC TGCAGGACTATGATTCTAATGAAATGGTTCGAATGATTTGTTGTGCTGCCGCTTGTGTACGTCATTTAGCACGGTTTCGACCGCGAATGAGCCAGATAGT TCGAGCTTTGGAAGGAAATATGCCTCTAGATGAACTGAATGAGGGGATCACTCCTGGTCTTAGCTCAGTATACAGTTCTGCTAGCTCAGATTATAGCAAT CGGCAACATGAGGAGGACATGAAGAAATTCAGGAAGTTAGCACTAGAAAGTCTTGAGCATGATAGCACAGTGAACCCACCAGCAAGTACAAGCAGCCAAG AATGCAGTGCCGGTGAGTCTGATCAGAACCCATTCAGCGCAAGCACAGAAGGCCGACAAACTACACAAGAGATGGATTCACAAAGAATGGAGAAGAACAT CAAAGATACCCAGGAAAGGTCTTAA
AA sequence Show only first row Show all	>Potri.003G053301.1 pacid=42786947 polypeptide=Potri.003G053301.1.p locus=Potri.003G053301 ID=Potri.003G053301.1.v4.1 annot-version=v4.1 MSSPAPGVSPVPNNSTSPPPVSSLTSPPPPDTTVSQAPPPTNSSGALVPPPPAAGSKAPSSPVLAALIVGVILGVLAGVGISVYVYRRKKRKEAQRLLLG GQPSQVASKDDGLPLHWQPNMAPAADNKIMMWPKPTIPQGAPPNYQLQPMLGIFAEQPSTSSGMGSDKQVISHTSGISLGYSQTTFTSEELAMATDNFSN ANLLGQGGFGYVHKGILANGTVVAIKQLKSGSGQGEREFQAEIEIISRVHHRHLVSLVGYCITGSQRMLVYEFVPNYTLEFHLHGNGNPTMSWSTRMRIA VGSAKGLTYLHEDCQPKIIHRDIKAANILIDQSFEAKVADFGLARYSLDTETHVSTRVMGTFGYMAPEYASSGKLTEKSDVYSFGVVLLELISGRRPVDR TQSYIDDSIVDWARPLLKQALEDSNYDAVVDPKLQDYDSNEMVRMICCAAACVRHLARFRPRMSQIVRALEGNMPLDELNEGITPGLSSVYSSASSDYSN RQHEEDMKKFRKLALESLEHDSTVNPPASTSSQECSAGESDQNPFSASTEGRQTTQEMDSQRMEKNIKDTQERS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52290		AtPERK15	proline-rich extensin-like rec...		Potri.003G053301 [exp]	0	1
AT4G38520			Protein phosphatase 2C family ...		Potri.004G177100 [exp]	4.47	0.7200
AT5G41840			F-box/RNI-like superfamily pro...		Potri.006G244700 [exp]	4.89	0.7409
AT1G17665			unknown protein		Potri.003G038600 [exp]	5.09	0.7671
AT3G62210		EDA32	embryo sac development arrest ...		Potri.013G003000 [exp]	8.30	0.7488
AT1G70950			TPX2 (targeting protein for Xk...		Potri.010G113000 [exp]	9.16	0.7166
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125200 [exp]	11.48	0.6898
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Potri.006G064200 [exp]	11.53	0.7096	Pt-CRCK3.1
AT1G72990		BGAL17	beta-galactosidase 17 (.1.2)		Potri.003G037000 [exp]	12.48	0.6866
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Potri.006G264000 [exp]	19.23	0.6915
AT2G17550			unknown protein		Potri.005G101700 [exp]	22.04	0.6747

Compare expression of checked genes

Potri.003G053301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.