Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33870 234 / 6e-73 Peroxidase superfamily protein (.1) AT5G22410 169 / 1e-48 RHS18 root hair specific 18 (.1) AT1G44970 168 / 4e-48 Peroxidase superfamily protein (.1) AT3G01190 167 / 5e-48 Peroxidase superfamily protein (.1) AT5G51890 167 / 5e-48 Peroxidase superfamily protein (.1) AT2G38390 164 / 1e-46 Peroxidase superfamily protein (.1) AT5G42180 162 / 3e-46 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT5G06720 162 / 4e-46 ATPA2 peroxidase 2 (.1) AT1G05260 160 / 2e-45 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT5G15180 160 / 2e-45 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G182400 [exp] 365 / 3e-122 AT4G33870 254 / 2e-79 Peroxidase superfamily protein (.1) Potri.007G067200 [exp] 180 / 6e-52 AT4G33870 253 / 2e-80 Peroxidase superfamily protein (.1) Potri.004G023200 [exp] 174 / 2e-50 AT3G01190 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 171 / 2e-49 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1) Potri.004G023100 [exp] 171 / 3e-49 AT3G01190 403 / 1e-141 Peroxidase superfamily protein (.1) Potri.011G027300 [exp] 169 / 1e-48 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 164 / 6e-47 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.015G003600 [exp] 164 / 8e-47 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.016G058200 [exp] 164 / 8e-47 AT5G06720 428 / 2e-151 peroxidase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005679 [exp] 176 / 2e-51 AT4G26010 353 / 3e-122 Peroxidase superfamily protein (.1) Lus10020312 [exp] 181 / 1e-49 AT1G04170 845 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10013631 [exp] 171 / 2e-49 AT5G17820 331 / 2e-113 Peroxidase superfamily protein (.1) Lus10001324 [exp] 169 / 9e-49 AT5G17820 327 / 6e-112 Peroxidase superfamily protein (.1) Lus10027163 [exp] 169 / 1e-48 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10018375 [exp] 167 / 4e-48 AT5G17820 293 / 1e-98 Peroxidase superfamily protein (.1) Lus10015555 [exp] 167 / 6e-48 AT2G41480 432 / 9e-153 Peroxidase superfamily protein (.1) Lus10004859 [exp] 165 / 3e-47 AT5G22410 309 / 1e-104 root hair specific 18 (.1) Lus10039681 [exp] 164 / 2e-46 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10004163 [exp] 162 / 6e-46 AT5G06720 446 / 1e-158 peroxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.003G053700.1 pacid=42787259 polypeptide=Potri.003G053702.1.p locus=Potri.003G053700 ID=Potri.003G053700.1.v4.1 annot-version=v4.1 ATGTTGACATCGATCTTTGGAATCGGAAACATGAGAAAACTGAGCTTTCTTGTATTCATTATTTGCATTTTGATCTCTGTCAAGAACCAAAATGCAGAGA TCAAGAAGAACTCGTGGCCATATTCATCGTGGGATTCCTTTCCTTCCATATTCTTGTCTCCTTTGTCGTTTATGGAAGAAGAAGAAGAAGTAGGGCATTC AAATCGGTCACTTGAGTATGATTTCTATCGTGATTCGTGCCCACAGGCAGAGAGAATCATTCTCAGGGTGGTTCAGGAGCTTAACAAAGTCAACACCAGA GTAGCTCCTGCTCTTCTAAGGCTTATGTTTCATGATTGTTTCATTGAGGGGTGTGATGCGTCTGTTTTGTTGGATGCTGCTATAGGCATTGATTCGGAGA AAGACTCTCCTCCCAATCAAAATTTGAAGGGATTTGATATAATTGACAGAATCAAATCAGAGATTGAAAAGGTGTGCCCAGGAGTTGTTTCCTGTGCCGA TATTGTTGCTTTAGCAGCCAGAGAAGGTGTTGTTCTGATATTGCAACACATCAAACTTCCTTCACCCAATGCTGATCTATCTGAAACCCTTGCATCTTTC GCCTCTAGGGGTTTCGATGAAAGAGAAACTGTCAGTCTCCTGGGTGGTCACAGCATAGGAGTAATCCACTGCAAATTCTTCCAAAACCGTCTCTACAACT TCAGTTGGACTAATAAGCCCGATCCATCTCTGGATACTGGATTTCTTAGCCTATTGAGATCAAGATGCAACAACAATAACTCATCAAAGGAAGCTTCACC TTCACCTTCGCCTTCCTTCAAAGCCCCACCACCATCATCTGCACCGTCGACTTCCTTTGATGGGACCAAGTCACCATCAACAGCACCGTCACTTTCTTGT AGTGGATCGCCATCTTCATCATCCAGCACATCAGAAATGAGGGTCTCCCCATCATCATCGACAGCACCATCACCTTCCTTGAAAGGCTCAATATCTTCCC CGCACTCATCATCAGCACCCTCATCAGCTTCCTTCGAAGATTCACTGCTTTCCACACTGGAGGAGCCAGGAATGAATATGGCCTATGAGGGACCAGGAGT AGATTTTGGCACATTGTACTACCACGGTCTTTTGCAAGGTAAAGGAATCCTTTATGCTGATCAGCAGCTAATGGCTGGGGTAGAAACGAGGATTTGGGTA CGAGCATATGCTTCTGACATCTCCTTGTTCCGCCGAGACTATGCGCTAGCAATAATGAAGCTCTCAATTCTCAGAGTTCTGACAGGATCAACAGGCCAAG TCCGGCTCCATTGTTCAAAGGTGGCATGA
AA sequence Show only first row Show all	>Potri.003G053700.1 pacid=42787259 polypeptide=Potri.003G053702.1.p locus=Potri.003G053700 ID=Potri.003G053700.1.v4.1 annot-version=v4.1 MLTSIFGIGNMRKLSFLVFIICILISVKNQNAEIKKNSWPYSSWDSFPSIFLSPLSFMEEEEEVGHSNRSLEYDFYRDSCPQAERIILRVVQELNKVNTR VAPALLRLMFHDCFIEGCDASVLLDAAIGIDSEKDSPPNQNLKGFDIIDRIKSEIEKVCPGVVSCADIVALAAREGVVLILQHIKLPSPNADLSETLASF ASRGFDERETVSLLGGHSIGVIHCKFFQNRLYNFSWTNKPDPSLDTGFLSLLRSRCNNNNSSKEASPSPSPSFKAPPPSSAPSTSFDGTKSPSTAPSLSC SGSPSSSSSTSEMRVSPSSSTAPSPSLKGSISSPHSSSAPSSASFEDSLLSTLEEPGMNMAYEGPGVDFGTLYYHGLLQGKGILYADQQLMAGVETRIWV RAYASDISLFRRDYALAIMKLSILRVLTGSTGQVRLHCSKVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33870			Peroxidase superfamily protein...		Potri.003G053700 [exp]	0	1
AT2G47760		AtALG3, ALG3	Arabidopsis thaliana asparagin...		Potri.014G131600 [exp]	9.79	0.9456
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Potri.002G238600 [exp]	10.67	0.9009
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Potri.009G082700 [exp]	12.64	0.9556
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G109800 [exp]	14.49	0.9527
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G110400 [exp]	14.83	0.9490
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Potri.010G145600 [exp]	15.09	0.9248
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.005G184400 [exp]	15.23	0.8540	GA20ox3
AT2G24940		ATMAPR2	membrane-associated progestero...		Potri.006G266200 [exp]	16.24	0.9469
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G109300 [exp]	16.52	0.9454
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G110640 [exp]	22.58	0.9421

Compare expression of checked genes

Potri.003G053700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.