Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79900 420 / 6e-149 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) AT5G46800 137 / 3e-38 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) AT2G33820 118 / 6e-31 ATMBAC1 Mitochondrial substrate carrier family protein (.1) AT5G01340 105 / 4e-26 AtmSFC1 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) AT1G34065 105 / 1e-25 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G32400 92 / 9e-21 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT4G11440 92 / 2e-20 Mitochondrial substrate carrier family protein (.1) AT4G39460 90 / 2e-20 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT5G19760 89 / 3e-20 Mitochondrial substrate carrier family protein (.1) AT4G01100 90 / 4e-20 ADNT1 adenine nucleotide transporter 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G182000 [exp] 529 / 0 AT1G79900 424 / 1e-150 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.003G091500 [exp] 141 / 7e-40 AT5G46800 443 / 4e-158 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Potri.001G142600 [exp] 140 / 2e-39 AT5G46800 434 / 1e-154 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Potri.004G046801 [exp] 122 / 2e-32 AT2G33820 453 / 4e-162 Mitochondrial substrate carrier family protein (.1) Potri.011G056000 [exp] 120 / 7e-32 AT2G33820 460 / 9e-165 Mitochondrial substrate carrier family protein (.1) Potri.016G119500 [exp] 108 / 2e-27 AT5G01340 542 / 0.0 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 102 / 3e-24 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.006G252100 [exp] 98 / 4e-23 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.005G197200 [exp] 96 / 1e-22 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037544 [exp] 463 / 9e-166 AT1G79900 408 / 2e-144 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Lus10011451 [exp] 459 / 3e-164 AT1G79900 410 / 4e-145 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Lus10000906 [exp] 144 / 6e-41 AT5G46800 482 / 1e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Lus10004565 [exp] 142 / 7e-40 AT5G46800 481 / 2e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Lus10015420 [exp] 103 / 3e-25 AT2G33820 415 / 7e-147 Mitochondrial substrate carrier family protein (.1) Lus10027817 [exp] 102 / 6e-25 AT5G01340 526 / 0.0 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 100 / 4e-23 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10032522 [exp] 99 / 4e-23 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10005045 [exp] 95 / 3e-22 AT5G01340 518 / 0.0 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) Lus10005787 [exp] 95 / 4e-22 AT4G39460 494 / 2e-177 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.003G053900.1 pacid=42786963 polypeptide=Potri.003G053900.1.p locus=Potri.003G053900 ID=Potri.003G053900.1.v4.1 annot-version=v4.1 ATGAATGGGAGTGAGATCATAATGGACTTTTGGCCAGAGTTTATTGCTAGCAGTTGGGGTAGGGAATTTGTGGCTGGTGGATTTGGTGGAATTGCTGGTA TAATTTCTGGTTATCCTCTTGATACTCTACGTATCCGGCTACAACAATCCAACTCTGGCTCTGCCTTCAGTATTCTTCGCCGAGTTATGAGCAGTGAAGG GCCTGCTGCGCTCTATAGAGGCATGGGTGCACCCCTGGCATCTGTCACCTTCCAGAATGCCATGGTTTTCCAGACCTATGCTATCCTCTCGAGAGCATTA GACTCATCCGCTTCAGCTAATGATCCTCCTTCTTACAAAGGTGTTGCTCTAGGAGGAGTTGGTACTGGGGCTATACAGAGCATTATTCTTTCTCCTGTAG AACTGATAAAAATTCGCCTCCAATTGCAGAACAGAAATCATGCGAATCTCCAGGAGGCTGCTAGTCCCAAAGGTCCACTAAGTGTTGCCAAGAGCATACT GAAAACAGAAGGTCTAAAAGGAATGTACCGGGGTTTTGTGATCACGGTCCTGAGAGACGCACCTGCTTATGGTGTCTACTTTTGGACATATGAATACATG AGAGAGCAGTTTCACCCTGGCTGCAGAAAGAATGGTCAAGAAAGCGTACGAACCATGCTGACGGCAGGAGGCCTCGCAGGAGTTGCTAGCTGGCTCTGCT GCTATCCATTAGATGTTGTGAAAACCAGATTACAAGCTCAATCACCATCCTCCCAACTTAAGTATAAAGGCATTCTGGATTGCTTTAGCCGGAGTGTTAA AGAAGATGGTTACTGTGTTCTCTGGCGAGGTTTGGGGACTGCTGTTGCAAGAGCTTTTGTAGTTAATGGAGCTGTATTTGCTTCTTACGAGACTGCGTTG CGGTGTCTATTCAACAATGGAAACATTCAGACAGAGAACACCATCTAG
AA sequence Show only first row Show all	>Potri.003G053900.1 pacid=42786963 polypeptide=Potri.003G053900.1.p locus=Potri.003G053900 ID=Potri.003G053900.1.v4.1 annot-version=v4.1 MNGSEIIMDFWPEFIASSWGREFVAGGFGGIAGIISGYPLDTLRIRLQQSNSGSAFSILRRVMSSEGPAALYRGMGAPLASVTFQNAMVFQTYAILSRAL DSSASANDPPSYKGVALGGVGTGAIQSIILSPVELIKIRLQLQNRNHANLQEAASPKGPLSVAKSILKTEGLKGMYRGFVITVLRDAPAYGVYFWTYEYM REQFHPGCRKNGQESVRTMLTAGGLAGVASWLCCYPLDVVKTRLQAQSPSSQLKYKGILDCFSRSVKEDGYCVLWRGLGTAVARAFVVNGAVFASYETAL RCLFNNGNIQTENTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79900		ATMBAC2, BAC2	RABIDOPSIS MITOCHONDRIAL BASIC...		Potri.003G053900 [exp]	0	1
					Potri.005G038200 [exp]	2.44	0.8043
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.015G027800 [exp]	3.74	0.8099
AT4G24970			Histidine kinase-, DNA gyrase ...		Potri.003G167201 [exp]	7.34	0.7611
AT5G13920			GRF zinc finger / Zinc knuckle...		Potri.009G112676 [exp]	8.36	0.7698
AT5G42200			RING/U-box superfamily protein...		Potri.002G017400 [exp]	13.26	0.8131
AT3G14280			unknown protein		Potri.001G163100 [exp]	14.83	0.7245
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Potri.008G083100 [exp]	21.63	0.7298	ZIP1.2
AT2G35550	BBR_BPC	BPC7, BBR/BPC7,...	basic pentacysteine 7 (.1.2.3....		Potri.001G133900 [exp]	30.00	0.7218
AT4G03140			NAD(P)-binding Rossmann-fold s...		Potri.014G135510 [exp]	31.30	0.7286
AT4G01440			nodulin MtN21 /EamA-like trans...		Potri.002G182700 [exp]	33.46	0.7430

Compare expression of checked genes

Potri.003G053900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.