Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79910 218 / 1e-65 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G32350 181 / 3e-49 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G52315 149 / 2e-40 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G35730 128 / 7e-32 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G25420 109 / 4e-26 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT1G34220 110 / 2e-25 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G29440 100 / 7e-22 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G14830 99 / 7e-22 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G19710 99 / 3e-21 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G13340 81 / 4e-16 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G054601 [exp] 793 / 0 AT1G79910 140 / 3e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054700 [exp] 725 / 0 AT1G79910 141 / 1e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.001G181300 [exp] 673 / 0 AT1G79910 244 / 1e-75 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.018G079500 [exp] 199 / 2e-56 AT4G32350 240 / 1e-69 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.007G059800 [exp] 125 / 1e-30 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.008G121300 [exp] 110 / 2e-26 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.006G149800 [exp] 113 / 6e-26 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.013G135700 [exp] 111 / 8e-26 AT2G14830 228 / 2e-67 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.013G117100 [exp] 110 / 3e-25 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035885 [exp] 258 / 9e-80 AT1G79910 235 / 1e-72 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10025932 [exp] 252 / 1e-74 AT5G48840 440 / 2e-149 ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, homolog of bacterial PANC (.1) Lus10011455 [exp] 225 / 1e-68 AT1G79910 233 / 1e-73 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10025779 [exp] 206 / 9e-60 AT1G79910 199 / 8e-59 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10034905 [exp] 197 / 4e-55 AT4G32350 256 / 3e-75 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10023635 [exp] 196 / 1e-54 AT4G32350 252 / 9e-74 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10037536 [exp] 181 / 9e-52 AT1G79910 191 / 2e-57 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10038167 [exp] 140 / 2e-35 AT5G48840 447 / 7e-155 ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, homolog of bacterial PANC (.1) Lus10041836 [exp] 117 / 3e-28 AT4G35730 423 / 2e-145 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10028383 [exp] 115 / 1e-27 AT4G35730 415 / 2e-142 Regulator of Vps4 activity in the MVB pathway protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [poplar] [flax] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Potri.003G054500.1 pacid=42786748 polypeptide=Potri.003G054500.1.p locus=Potri.003G054500 ID=Potri.003G054500.1.v4.1 annot-version=v4.1 ATGTTTGACTGCCTTACAAGGTCCAACTTCTATACAAAATGCAAGACATCTGTAAAGATAACAAAGACACGCCTTGAGGCATTAAAGAAGAAGAAGAACA GTGTGATAAAGTACTTAAAGAATGATATGGCTGATCTCATCAGAACTGATCATGCTTACAAAGCTTTTTGCAGGGCAGAAGGGCTTCTGGCTGAGCAAAA CATGATAATCTATTACAATTTCATTGAGCAGCTCTGTGATTGCATCTCGGGCAATCTTTCCCTTATGAACAAACAGAAGGAATGCCCCGAGGAATGCAAA GAAGCTGTGCAATCTCTAATATATGCTGCAGCAAGATTTTCTGAATTTCCAGAGCTGCGAGATCTTCGTTCTGAATTCATTAATAGATATGGACCTCCTC TTGAAGCATTAGTTAATAAAGAGTTTGTTGACATGTTGAAGCCGAAGTCTATCACAGAAGAGATGAAGCTTCAATTAATGCACGACATAGCACTAGAGTT CTCCATAGAATGGAATTCAAAGTCTTTGGAACAGAAACTCTTTAAACCACCTCCGCCTCAACAAGACCAGCATAGGCATGAACATAATGATGAATATGAG CCGAAGAAGAGCAAGGATGACGCTTTTAGCTTGAATGATGATGACGGATACAAATGGGTAAAGAACAAGGATGATGCTTGCACAAAAAGAGACAGCCATG ACTTGGCCAACAAAGTACATGACAAGAGGGAGCATACCTTCCAGGAAAGAGATGATGAAAGGATTTTCACTTATCGAGGAAGACAGAATGCCAGTGATGA AAAATACAAACTGCAAAGCAGCAGTGAAGATGAAGTGTTTTCAGTCAGCAGGAGAGACAGCACTGACCAAGATAGCCTACTAGCTAGTTCAAGTTCAGTA GGAAGTGTTTCAGAAGATGAAGTAGATAGCAAGAAGCCCATTCCCTATAGATTTATTCCTCCCCCTTACCGCAGAACAACAATTGAGAAAGAAAGCAAGA TCGAAGAAACCCTACAACCAAATGATAAAATTGCTGCAGAGGAAGCAAATCATCCAGATGACTCGATCAAGGAAACCAAGCCCAAACCGAGATCAGTCAG AAGTAGACCATTGAAGCCACAACCAGGACACGAAAATTTTGGCAGTATTGAAAGACCGTTGAAGCCACCGCCAGGTCGTGAAAGGGTTGGCAGTATAAGC GATGAGTCTGCCAGGACTAAATCAAGTGCAATGAAGCAAGAAGAGCCTAGACGAGGTTCTAGAATCCTAAAAACAGATGATGATGAAAGGGATGAAGAAG AAAAGGTAAAGGATGGACTTTTGATGCATTACGGTAAGAAAGACTCACCTCATGAACCGAGCAAATCGAGTCCTTGTATAAAACCTCCTCCTTCAAGCCA AGCAAGTGATGATGCTGCTAAAACCTCAAGGCTCAGAAGTGTAATATCCGAATTAACTCTTCCAACTGGCAGAACATCAAGCCTGCGAGAACCAGGAACA ACAAGGCTTGGTCGAGCTGTTTCAGCAGAGCCGGATATAATGACTGGTCGTGTGCATCCCAACCTCCCAGATTGTGATGAATTGGCAGCTCGGATTGCAG CTCTTAAGGGAAGATAA
AA sequence Show only first row Show all	>Potri.003G054500.1 pacid=42786748 polypeptide=Potri.003G054500.1.p locus=Potri.003G054500 ID=Potri.003G054500.1.v4.1 annot-version=v4.1 MFDCLTRSNFYTKCKTSVKITKTRLEALKKKKNSVIKYLKNDMADLIRTDHAYKAFCRAEGLLAEQNMIIYYNFIEQLCDCISGNLSLMNKQKECPEECK EAVQSLIYAAARFSEFPELRDLRSEFINRYGPPLEALVNKEFVDMLKPKSITEEMKLQLMHDIALEFSIEWNSKSLEQKLFKPPPPQQDQHRHEHNDEYE PKKSKDDAFSLNDDDGYKWVKNKDDACTKRDSHDLANKVHDKREHTFQERDDERIFTYRGRQNASDEKYKLQSSSEDEVFSVSRRDSTDQDSLLASSSSV GSVSEDEVDSKKPIPYRFIPPPYRRTTIEKESKIEETLQPNDKIAAEEANHPDDSIKETKPKPRSVRSRPLKPQPGHENFGSIERPLKPPPGRERVGSIS DESARTKSSAMKQEEPRRGSRILKTDDDERDEEEKVKDGLLMHYGKKDSPHEPSKSSPCIKPPPSSQASDDAAKTSRLRSVISELTLPTGRTSSLREPGT TRLGRAVSAEPDIMTGRVHPNLPDCDELAARIAALKGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79910			Regulator of Vps4 activity in ...		Potri.003G054500 [exp]	0	1
AT1G79910			Regulator of Vps4 activity in ...		Potri.003G054601 [exp]	1.00	0.9355
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Potri.010G103000 [exp]	7.93	0.7405
AT1G49480	B3	REM19, RTV1	related to vernalization1 1 (....		Potri.004G147200 [exp]	8.83	0.7413
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.001G027700 [exp]	10.00	0.7317
AT5G28150			Plant protein of unknown funct...		Potri.013G038000 [exp]	10.95	0.7529
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Potri.001G361200 [exp]	14.07	0.7330
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Potri.001G116500 [exp]	17.43	0.7116	SMO1.2
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Potri.012G118700 [exp]	19.62	0.7249
AT1G79910			Regulator of Vps4 activity in ...		Potri.003G054700 [exp]	21.44	0.7593
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.007G082400 [exp]	23.32	0.7368

Compare expression of checked genes

Potri.003G054500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.