Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79910 141 / 2e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G52315 119 / 1e-29 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G32350 120 / 9e-29 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G35730 97 / 2e-21 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G25420 78 / 6e-16 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT1G34220 79 / 2e-15 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G29440 67 / 2e-11 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G19710 65 / 8e-11 Regulator of Vps4 activity in the MVB pathway protein (.1) AT2G14830 59 / 3e-09 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G13340 58 / 7e-09 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G054500 [exp] 790 / 0 AT1G79910 216 / 4e-65 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054700 [exp] 723 / 0 AT1G79910 141 / 1e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.001G181300 [exp] 555 / 0 AT1G79910 244 / 1e-75 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.018G079500 [exp] 144 / 4e-37 AT4G32350 240 / 1e-69 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.007G059800 [exp] 91 / 2e-19 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.008G121300 [exp] 78 / 1e-15 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.006G149800 [exp] 77 / 2e-14 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.019G087400 [exp] 76 / 2e-14 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.004G038600 [exp] 74 / 8e-14 AT2G14830 175 / 3e-48 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035885 [exp] 182 / 8e-52 AT1G79910 235 / 1e-72 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10025932 [exp] 171 / 4e-46 AT5G48840 440 / 2e-149 ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, homolog of bacterial PANC (.1) Lus10011455 [exp] 162 / 2e-45 AT1G79910 233 / 1e-73 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10025779 [exp] 166 / 3e-45 AT1G79910 199 / 8e-59 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10037536 [exp] 152 / 1e-41 AT1G79910 191 / 2e-57 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10034905 [exp] 141 / 5e-36 AT4G32350 256 / 3e-75 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10023635 [exp] 140 / 1e-35 AT4G32350 252 / 9e-74 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10041836 [exp] 82 / 2e-16 AT4G35730 423 / 2e-145 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10038167 [exp] 82 / 2e-16 AT5G48840 447 / 7e-155 ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, homolog of bacterial PANC (.1) Lus10028383 [exp] 79 / 2e-15 AT4G35730 415 / 2e-142 Regulator of Vps4 activity in the MVB pathway protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [poplar] [flax] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Potri.003G054601.1 pacid=42785489 polypeptide=Potri.003G054601.1.p locus=Potri.003G054601 ID=Potri.003G054601.1.v4.1 annot-version=v4.1 ATGATAATCTATTACAATTTCATTGAGCAGCTCTGTGATTGCATCTCGAGCAATCTTTCCCTTATGAACAAACAGAAGGAATGCCCCGAGGAATGCAAAG AAGCTGTGCAATCTCTAATATATGCTGCAGCAAGATTTTCTGAATTTCCAGAGCTACGAGATCTTCGTTCTGAATTCATTAATAGATATGGACCTCCTCT TGAAGCATTAGTTAATAAAGAGTTTGTTGACATGTTGAAGCCGAAGTCTATCACAGAAGAGATGAAGCTTCAATTAATGCACGACATAGCACTAGAGTTC TCCATAGAATGGAATTCAAAGTCTTTGGAACAGAAACTCTTTAAACCACCTCCGCCTCAACAAGACCAGCATAGGCATGAACATAATGATGAATATGAGC CGAAGAAGAGCAAGGATGACGCTTTTAGCTTGAATGATGATGACGGATACAAATGGGTAAAGAACAAGGATGATGCTTGCACAAAAAGAGACAGCCATGA CTTGGCCAACAAAGTACATGACAAGAGGGAGCATACCTTCCAGGAAAGAGATGATGAAAGGATTTTCACTTATCGAGGAAGACAGAATGCCAGTGATGAA AAATACAAACTGCAAAGCAGCAGTGAAGATGAAGTGTTTTCAGTCAGCAGGAGAGACAGCACTGACCAAGATAGCCTACTAGCTAGTTCAAGTTCAGTAG GAAGTGTTTCAGAAGATGAAGTAGATAGCAAGAAGCCCATTCCCTATAGATTTATTCCTCCCCCTTACCGCAGAACAACAATTGAGAAAGAAAGCAAGAT CGAAGAAACCCTACAACCAAATGATAAAATAGCTGCAGAGGAAGCAAATCATCCAGATGACTCGATCAAGGAAACCAAGCCCAAACCGAGATCAGTCAGA AGTAGACCATTGAAGCCACAACCAGGACACGAAAATTTTGGCAGTATTGAAAGACCGTTGAAGCCACCGTCAGGTCGTGAAAGGGTTGGCAGTATAAGCG ATGAGTCTGCCAGGACTAAATCAAGTGCAATGAAGCAAGAAGAGCCTAGACGAGGTTCTAGAATCCTAAAAACAGATGATGATGAAAGGGATGAAGAAGA AAAGGTAAAGGATGGACTTTTGATGCATTACGGTAAGAAAGACTCACCTCATGAACCGAGCAAATCGAGTCCTTGTATAAAACCTCCTCCTTCAAGCCAA GCAAGTGATGATGCTGCTAAAACCTCAAGGCTCAGAAGTGTAATATCCGAATTAACTCTTCCAACTGGCAGAACATCAAGCCTGCGAGAACCAGGAACAA CAAGGCTTGGTCGAGCTGTTTCAGCAGAGCCGGATATAATGACTGGTCGTGTGCATCCCAACCTCCCAGATTGTGATGAATTGGCAGCTCGGATTGCAGC TCTTAAGGGAAGATAA
AA sequence Show only first row Show all	>Potri.003G054601.1 pacid=42785489 polypeptide=Potri.003G054601.1.p locus=Potri.003G054601 ID=Potri.003G054601.1.v4.1 annot-version=v4.1 MIIYYNFIEQLCDCISSNLSLMNKQKECPEECKEAVQSLIYAAARFSEFPELRDLRSEFINRYGPPLEALVNKEFVDMLKPKSITEEMKLQLMHDIALEF SIEWNSKSLEQKLFKPPPPQQDQHRHEHNDEYEPKKSKDDAFSLNDDDGYKWVKNKDDACTKRDSHDLANKVHDKREHTFQERDDERIFTYRGRQNASDE KYKLQSSSEDEVFSVSRRDSTDQDSLLASSSSVGSVSEDEVDSKKPIPYRFIPPPYRRTTIEKESKIEETLQPNDKIAAEEANHPDDSIKETKPKPRSVR SRPLKPQPGHENFGSIERPLKPPSGRERVGSISDESARTKSSAMKQEEPRRGSRILKTDDDERDEEEKVKDGLLMHYGKKDSPHEPSKSSPCIKPPPSSQ ASDDAAKTSRLRSVISELTLPTGRTSSLREPGTTRLGRAVSAEPDIMTGRVHPNLPDCDELAARIAALKGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79910			Regulator of Vps4 activity in ...		Potri.003G054601 [exp]	0	1
AT1G79910			Regulator of Vps4 activity in ...		Potri.003G054500 [exp]	1.00	0.9355
AT1G79910			Regulator of Vps4 activity in ...		Potri.003G054700 [exp]	3.00	0.8514
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Potri.018G021900 [exp]	6.48	0.7588
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Potri.001G116500 [exp]	8.48	0.7472	SMO1.2
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.001G027700 [exp]	9.79	0.7402
AT3G07500	FAR1_related		Far-red impaired responsive (F...		Potri.007G128900 [exp]	13.85	0.7474
AT5G46570		BSK2	BR-signaling kinase 2 (.1)		Potri.003G088900 [exp]	18.02	0.7639
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Potri.010G101100 [exp]	22.60	0.7557
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.004G205000 [exp]	22.80	0.7025
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Potri.005G083300 [exp]	24.67	0.7086

Compare expression of checked genes

Potri.003G054601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.