Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52320 625 / 0 unknown protein AT5G25590 546 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT1G02110 199 / 2e-54 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 196 / 6e-53 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT3G60320 178 / 5e-47 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 143 / 1e-35 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 137 / 1e-33 Protein of unknown function (DUF630 and DUF632) (.1) AT2G34670 129 / 5e-31 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT1G77500 129 / 9e-31 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 127 / 4e-30 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G181100 [exp] 926 / 0 AT1G52320 615 / 0.0 unknown protein Potri.018G036400 [exp] 611 / 0 AT5G25590 656 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.006G244100 [exp] 595 / 0 AT5G25590 603 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G112300 [exp] 206 / 1e-57 AT3G51290 576 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.004G177200 [exp] 204 / 4e-56 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G056700 [exp] 202 / 5e-56 AT3G51290 545 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.009G137500 [exp] 199 / 2e-54 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.005G108400 [exp] 184 / 5e-49 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1) Potri.014G047400 [exp] 180 / 1e-47 AT3G60320 862 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035887 [exp] 795 / 0 AT1G52320 747 / 0.0 unknown protein Lus10025777 [exp] 716 / 0 AT1G52320 652 / 0.0 unknown protein Lus10022116 [exp] 561 / 0 AT5G25590 753 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10037901 [exp] 536 / 0 AT5G25590 627 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10038627 [exp] 457 / 2e-155 AT5G25590 538 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10002864 [exp] 297 / 9e-96 AT5G25590 339 / 1e-111 Protein of unknown function (DUF630 and DUF632) (.1) Lus10000014 [exp] 179 / 7e-53 AT5G25590 209 / 3e-64 Protein of unknown function (DUF630 and DUF632) (.1) Lus10028431 [exp] 193 / 8e-53 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10041884 [exp] 189 / 1e-52 AT3G51290 649 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10024007 [exp] 167 / 4e-43 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [poplar] [flax] DUF632 Protein of unknown function (DUF632) PF04783 [poplar] [flax] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Potri.003G054800.1 pacid=42786032 polypeptide=Potri.003G054800.1.p locus=Potri.003G054800 ID=Potri.003G054800.1.v4.1 annot-version=v4.1 ATGGGATGTAATCAGTCGAAGATCGAGAATGAAGAAGCAATATCGAGATGCAAAGAGAGAAAACTGTTCATGAAAGAAGCTGTCTCCGCCCGCAACGCCT TCGCCGCCGCCCACTCTTCCTACTCTATTTCCTTAAAGAACACTGGTGCCGCCCTCAACGATTTTGCCCAAGCCGAAATCCCCCCTCATCTCTCCTCCTC CTCCTCCGAACCCATCCTCATCCAACATTCCTCCCCCTCCTCCTCCCCCGCCGCTCCTTTTCCGCCTATTTCCGACGTCCCCCCTCCTCCCCCCCCTGAC CACGTGGACTTCCAGCCTTTGCAGCGAGCTGTGAGCATGCCGGAGATGAAGATTCAGAAACCGGAGCTGAAGCCGCTTGAGGAGCCCATAATTGAAGAGG ATGAGACGGAATCTGAAGCTCATGATAGTGAGAGATTAGTGAGAAAGAGAAGTATTAGTAGTAGTAACAGAGTAACTTCTGTACAAGAAAATCACCATCA ACAGCAACACCATCACCAAGATGCCACCTGGGATTATTTCTTCCCCTCCGTGGATAGCATTCCGGGACCGAGTTTGGCGGAACCAACCGAAATGGAGGAA GATGTGAGGGTGAATAAGGAACAAGTGCAGAGGAAAGTGTTTCAGGAGAGGGTGGAGCCACCACCGATGGTGGTGGAGAAGAAGGTGGAGAAGGCGGTGG AAGTTCCGGTTCCGGCTCCGGAGAAGAAGGCGGGTAGGAAGGTGGAAGGAGGGAGGAGGGGTGTGAAAGGGATGAACTTGATGAAGATATTCGAGGATCT TGATGATCATTTTTTGAAGGCATCTGAGAGTGCCCATGAGGTTTCTAAGATGTTGGAGGCAACGCGATTGCATTATCACTCTAATTTTGCTGACAATAGA GGACATATTGATCACTCTGCAAGAGTGATGCGTGTAATTACATGGAATCGCTCATTTAGAGGTGTTCCTAATCTTGATGATGGGAAGGATGATTTCGACA GAGAAGAGCATGAAACTCATGCAACCGTGCTGGATAAAATGCTGGCTTGGGAAAAGAAGCTTTATGATGAAGTGAAGGCAGGTGAATTGATGAAGTTCGA GTATCAAAGGAAGGTTAATTCATTGAATAAGCAGAAGAAAAGAGGTACAAACACTGAATCAATAGAGAAATTAAAAGCAGCTGTAAGCCATCTGCATACA AGATACATTGTAGACATGCAATCAATGGATTCGACAGTTTCAGAGATAAACCGTTTACGTGATGAACAATTATATCCAAAACTTGTTCAGCTTGTTGATG GGATGGCCACAATGTGGAAAACCATGCTAGTTCACCACGAGGACCAGTCTAAGATTGTAAATGCCCTGAGATTTTTGGACATTTCACAATCCTCCAAGGA AACTAGTGAGCACCACCATGATCGTACCTTTCAGCTATTGGTTGTTGTGCAAGAGTGGCAGTCACAGTTTTGTAAACTTATAGATAATCAGAAAGCGTAC ATAAAGTCCCTGAACAGTTGGCTAAAGCTGAACCTCATTCCCATAGAGAGCAACTTGAAGGAAAAAGTTTCTTCTCCACCAAGAGTTCGGAACCCTCCCA TCCAGCCCCTTCTTATTGCTTGGCATGATTTTTTGGACAAACTTCCTGATGAGGTTGCAAGAACTGCTATAAATAATTTTGCTGCTGTAATTCATACAAT CCTGCAGCATCAAGAAGAAGAGATGAAGTTGAAAGAGAAATGTGAGGAAACAAGAAAAGAACTTTCCCAGAAGATGAGGAAATATGAAGACTGGTGGCGT AAATATATGCAGCAGAGAACACCTGATGAATTGGATCCTGAAAGGACAGAAGACAATTCTCATAATGATGCTATTGCAGAGAGACAGTCTGTTGTGGATG CAGTGAAGAACCGCTTGAAAGAGGAGGAAGAAGCCTATCGGAAGCAGTGCCTTCAGGTGAGGGAGAAATCTATGGCAAGCCTTAAAACTCGCTTGCCTGA GCTCTTCAGGGCCATGTCTGAGGTTGCTCATGCATGTTCAGAAATGTACAAGAACTTGAGGTCCATATCACAGGCATATTGCGGTAATGCAAACTAG
AA sequence Show only first row Show all	>Potri.003G054800.1 pacid=42786032 polypeptide=Potri.003G054800.1.p locus=Potri.003G054800 ID=Potri.003G054800.1.v4.1 annot-version=v4.1 MGCNQSKIENEEAISRCKERKLFMKEAVSARNAFAAAHSSYSISLKNTGAALNDFAQAEIPPHLSSSSSEPILIQHSSPSSSPAAPFPPISDVPPPPPPD HVDFQPLQRAVSMPEMKIQKPELKPLEEPIIEEDETESEAHDSERLVRKRSISSSNRVTSVQENHHQQQHHHQDATWDYFFPSVDSIPGPSLAEPTEMEE DVRVNKEQVQRKVFQERVEPPPMVVEKKVEKAVEVPVPAPEKKAGRKVEGGRRGVKGMNLMKIFEDLDDHFLKASESAHEVSKMLEATRLHYHSNFADNR GHIDHSARVMRVITWNRSFRGVPNLDDGKDDFDREEHETHATVLDKMLAWEKKLYDEVKAGELMKFEYQRKVNSLNKQKKRGTNTESIEKLKAAVSHLHT RYIVDMQSMDSTVSEINRLRDEQLYPKLVQLVDGMATMWKTMLVHHEDQSKIVNALRFLDISQSSKETSEHHHDRTFQLLVVVQEWQSQFCKLIDNQKAY IKSLNSWLKLNLIPIESNLKEKVSSPPRVRNPPIQPLLIAWHDFLDKLPDEVARTAINNFAAVIHTILQHQEEEMKLKEKCEETRKELSQKMRKYEDWWR KYMQQRTPDELDPERTEDNSHNDAIAERQSVVDAVKNRLKEEEEAYRKQCLQVREKSMASLKTRLPELFRAMSEVAHACSEMYKNLRSISQAYCGNAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52320			unknown protein		Potri.003G054800 [exp]	0	1
AT2G19400			AGC (cAMP-dependent, cGMP-depe...		Potri.006G146900 [exp]	2.64	0.7227
AT4G37100			Pyridoxal phosphate (PLP)-depe...		Potri.015G097000 [exp]	3.74	0.6909
AT1G05520			Sec23/Sec24 protein transport ...		Potri.001G307400 [exp]	8.36	0.6705
AT4G33380			unknown protein		Potri.014G031900 [exp]	9.38	0.6740
AT4G36750			Quinone reductase family prote...		Potri.005G126200 [exp]	11.74	0.6882
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Potri.017G078800 [exp]	18.73	0.6495	GN.2
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Potri.004G078800 [exp]	19.28	0.6672
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Potri.019G092800 [exp]	22.13	0.6482
AT2G47960			unknown protein		Potri.004G040500 [exp]	23.55	0.6271
AT5G11790		NDL2	N-MYC downregulated-like 2 (.1...		Potri.018G054900 [exp]	29.66	0.6135

Compare expression of checked genes

Potri.003G054800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.