Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19640 270 / 4e-93 ATRAB-F2B, ARA7, Ara-7, AtRABF2b, AtRab5B ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) AT5G45130 262 / 4e-90 ATRAB-F2A, RHA1, AtRab5A, AtRABF2a ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) AT3G54840 222 / 3e-74 ARA6, AtRABF1, Ara-6, AtRab5C Ras-related small GTP-binding family protein (.1.2) AT3G07410 156 / 4e-48 AtRABA5b RAB GTPase homolog A5B (.1) AT1G07410 152 / 3e-46 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT4G35860 150 / 7e-46 ATGB2, AtRABB1b, Atrab2C GTP-binding 2 (.1.2) AT4G17170 150 / 1e-45 ATRAB-B1B, AT-RAB2, AtRABB1c, AtRab2A ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) AT5G45750 147 / 2e-44 AtRABA1c RAB GTPase homolog A1C (.1) AT4G39890 147 / 2e-44 AtRABH1c RAB GTPase homolog H1C (.1) AT4G18800 147 / 2e-44 AthSGBP, AtRab11B, AtRABA1d RAB GTPase homolog A1D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G079300 [exp] 316 / 3e-111 AT5G45130 273 / 2e-94 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.015G113000 [exp] 277 / 9e-96 AT5G45130 339 / 2e-120 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.012G117800 [exp] 270 / 3e-93 AT5G45130 357 / 1e-127 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.008G035800 [exp] 222 / 3e-74 AT3G54840 367 / 3e-131 Ras-related small GTP-binding family protein (.1.2) Potri.010G226300 [exp] 221 / 9e-74 AT3G54840 373 / 7e-134 Ras-related small GTP-binding family protein (.1.2) Potri.004G061000 [exp] 154 / 3e-47 AT4G18800 392 / 9e-141 RAB GTPase homolog A1D (.1) Potri.011G070300 [exp] 151 / 5e-46 AT5G45750 392 / 1e-140 RAB GTPase homolog A1C (.1) Potri.009G159600 [exp] 150 / 6e-46 AT4G35860 412 / 7e-149 GTP-binding 2 (.1.2) Potri.016G002200 [exp] 149 / 3e-45 AT4G17170 394 / 6e-142 ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034903 [exp] 276 / 2e-95 AT5G45130 258 / 2e-88 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10038334 [exp] 257 / 8e-88 AT5G45130 349 / 3e-124 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10040625 [exp] 256 / 1e-87 AT5G45130 355 / 6e-127 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10018285 [exp] 253 / 3e-86 AT5G45130 359 / 3e-128 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10028820 [exp] 216 / 8e-72 AT3G54840 354 / 3e-126 Ras-related small GTP-binding family protein (.1.2) Lus10017462 [exp] 214 / 1e-68 AT3G54840 349 / 1e-121 Ras-related small GTP-binding family protein (.1.2) Lus10036196 [exp] 176 / 6e-57 AT5G45130 214 / 2e-72 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10036198 [exp] 173 / 2e-55 AT4G19640 216 / 8e-73 ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) Lus10020746 [exp] 155 / 1e-47 AT1G06400 375 / 3e-134 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) Lus10029789 [exp] 153 / 7e-47 AT1G06400 373 / 3e-133 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00025 [poplar] [flax] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Potri.003G054900.2 pacid=42786905 polypeptide=Potri.003G054900.2.p locus=Potri.003G054900 ID=Potri.003G054900.2.v4.1 annot-version=v4.1 ATGGCAAGACCTGGCAACAAGATCATTCAAGCTAAGCTGGTGCTTCTGGGGGATATGGGAACTGGGAAAACCAGTTTGGTATTAAGGTTTGTAAAGGGCC AGTTCTTCGATCACCAGGAACCAACAATAGGAGCGGCTTTTTTTACACAGATATTATCATTAACTGAAGCAACTGTGAAGTTTGATATTTGGGATACAGC AGGGCAAGAAAGATACCACAGCTTGGCTCCTATGTACTATCGCGGTGCAGCAGCAGCTGTTATTGTGTATGATATTTCCAGCATGGATACATTTGTTAGG GCCAAAAGGTGGGTTCAAGAGCTGCAAAGACAAGGAAATCCTAAGATGGTTATGGCATTAGTAGCAAATAAATTGGATTTGGACTCGAAGAGAGAGGTGC AGAATGAGGACGGTGAGCAATTCTCTCAAGAGAATGGGATGTTCTTCATGGAAACATCTGCAAAAACTGCACAAAATATTAACGAGCTTTTCTATGAAAT AGCTAAGAGATTGGCAAAGGCTTACCCTTCAAAGTCTACTGGGGTGAATCTGAATGATGAAACCGAAAGTAGGACAAGAAATCTATTCTGTTGCTCTGGT TAA
AA sequence Show only first row Show all	>Potri.003G054900.2 pacid=42786905 polypeptide=Potri.003G054900.2.p locus=Potri.003G054900 ID=Potri.003G054900.2.v4.1 annot-version=v4.1 MARPGNKIIQAKLVLLGDMGTGKTSLVLRFVKGQFFDHQEPTIGAAFFTQILSLTEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVIVYDISSMDTFVR AKRWVQELQRQGNPKMVMALVANKLDLDSKREVQNEDGEQFSQENGMFFMETSAKTAQNINELFYEIAKRLAKAYPSKSTGVNLNDETESRTRNLFCCSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19640		ATRAB-F2B, ARA7...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.003G054900 [exp]	0	1
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Potri.018G079300 [exp]	2.44	0.9235
					Potri.013G031800 [exp]	3.74	0.9223
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Potri.002G245400 [exp]	4.58	0.9025	RIN4.1
AT1G53380			Plant protein of unknown funct...		Potri.011G108000 [exp]	4.69	0.8828
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.009G022300 [exp]	4.89	0.8784
AT5G18470			Curculin-like (mannose-binding...		Potri.001G437875 [exp]	7.54	0.8407
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Potri.019G054300 [exp]	8.36	0.8935
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G014401 [exp]	9.48	0.8757
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Potri.015G065400 [exp]	10.58	0.8771
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Potri.016G014300 [exp]	11.48	0.8919

Compare expression of checked genes

Potri.003G054900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.