Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52330 181 / 1e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT4G13270 139 / 4e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G180600 [exp] 314 / 1e-109 AT1G52330 192 / 9e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.006G159400 [exp] 146 / 6e-44 AT4G13270 228 / 3e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142300 [exp] 49 / 6e-07 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037534 [exp] 169 / 2e-52 AT1G52330 160 / 2e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10011458 [exp] 169 / 2e-52 AT1G52330 168 / 2e-52 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10043216 [exp] 164 / 2e-50 AT4G13270 228 / 8e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10011095 [exp] 149 / 5e-45 AT4G13270 234 / 3e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10023631 [exp] 145 / 3e-43 AT4G13270 235 / 2e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10024264 [exp] 117 / 3e-32 AT4G13270 210 / 8e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003238 [exp] 47 / 4e-06 AT3G54200 143 / 3e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10035612 [exp] 41 / 0.0003 AT3G54200 142 / 8e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF03168 [poplar] [flax] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Potri.003G055000.1 pacid=42785140 polypeptide=Potri.003G055000.1.p locus=Potri.003G055000 ID=Potri.003G055000.1.v4.1 annot-version=v4.1 ATGGCTCCTCCCAAGAGTACTGAACCACCACTATCGCCAACTCATTGCTATGCTCAAATACCATGTCAGCATGAAGAAGGGTGTGTTGTGTTACCTTTTC ACCGCCACCCCACCACTCCGTTCTGCCGCCGATGGCCAATGATAACTACCGTGTTCCTCCTCCTCCTCCTCCTTTCAGCACTTGTCTATGTTTTTTGGCC GTCCGATCCCATGATCAAGGTCGTAGGGCTGCGCCTAGACAAGATACGCATACACACCTTGCCCATAATTAATATTGATCTATCTTTGTATGTTACTTTA AGAGTACGCAACGTCGATGTGTATTCCATGGATTTTAGAAGCCTTGATGTTGCTGTAAGGTACAAAGGGAAGAGACTGGGTCACGTGAGATCCGATCATG GACACGTGAGGGCACTAGGATCATCCTACGTGGATGCTGAAATAGATTTAAGGGGGATCAGTGTTTTGTCCGGCGTGGTGTCCTTGCTTGAGGACTTGGG TAGGGGTACGGTCCCGTTTGATACTGTCACTGAGGTTTCAGGCAAGCTTGGTTTGTTGTTCTTCGGGTTCCCTTTGAAGGCAAGAGTGTCCTGTGAAGTT CTGGTAAATACACACAATCAGACAATTGTTCGTCAAACTTGTTACCCTGAGAGATGA
AA sequence Show only first row Show all	>Potri.003G055000.1 pacid=42785140 polypeptide=Potri.003G055000.1.p locus=Potri.003G055000 ID=Potri.003G055000.1.v4.1 annot-version=v4.1 MAPPKSTEPPLSPTHCYAQIPCQHEEGCVVLPFHRHPTTPFCRRWPMITTVFLLLLLLSALVYVFWPSDPMIKVVGLRLDKIRIHTLPIINIDLSLYVTL RVRNVDVYSMDFRSLDVAVRYKGKRLGHVRSDHGHVRALGSSYVDAEIDLRGISVLSGVVSLLEDLGRGTVPFDTVTEVSGKLGLLFFGFPLKARVSCEV LVNTHNQTIVRQTCYPER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52330			Late embryogenesis abundant (L...		Potri.003G055000 [exp]	0	1
AT1G70140		ATFH8	formin 8 (.1)		Potri.008G192900 [exp]	4.89	0.8267
AT2G23360			Plant protein of unknown funct...		Potri.007G046100 [exp]	7.87	0.8199
AT1G67980		CCOAMT	caffeoyl-CoA 3-O-methyltransfe...		Potri.008G136600 [exp]	8.48	0.8154
AT5G24450			Transcription factor IIIC, sub...		Potri.017G007200 [exp]	8.66	0.8139
AT1G28590			GDSL-like Lipase/Acylhydrolase...		Potri.004G054300 [exp]	9.48	0.8184
AT1G20670			DNA-binding bromodomain-contai...		Potri.019G132601 [exp]	12.48	0.8121
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Potri.002G016700 [exp]	12.96	0.8110
AT3G57620			glyoxal oxidase-related protei...		Potri.013G034900 [exp]	13.41	0.7949
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Potri.001G170800 [exp]	15.87	0.7911
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Potri.009G148800 [exp]	16.24	0.7451

Compare expression of checked genes

Potri.003G055000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.