Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52343 96 / 2e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G035800 [exp] 71 / 4e-14 AT4G32680 76 / 1e-15 unknown protein Potri.006G244600 [exp] 47 / 3e-06 AT4G32680 43 / 4e-05 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025776 [exp] 89 / 1e-20 AT1G52343 112 / 1e-29 unknown protein Lus10007686 [exp] 77 / 3e-16 AT1G52343 102 / 2e-25 unknown protein Lus10035888 [exp] 58 / 4e-11 AT1G52343 57 / 1e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G055200.1 pacid=42786559 polypeptide=Potri.003G055200.1.p locus=Potri.003G055200 ID=Potri.003G055200.1.v4.1 annot-version=v4.1 ATGGTCAGCGATGGCAAAGAAGAGAGAAGAAGAAGAAGAATCGTGGAAAGAGGGTCGGACCGGATGGCTCTAATCACCGGCCAAATTCAAAGTCTCGATT CGTCTTCATCACAAGCATCTTCAACAACATCAAATTATAGTCACCTTGCACATGATAATCCATCATCCCCATCAACCACGGTCTCTCAACATGCTCAAAT TGACGCTGGTTCTGGAGGAGCAGATTACGAGCCTGGTTCTAAATTTCCGAAACGAAAGGCCAGCAATGAAGCTTTCGAAGGGATCGGCTTTGACATTAGA AACCAAGTAGAACAACATTTACAGGAACGAGTGACACCTACAGAAGCTTACAGCAAGATGACTGAAATACAAATGTCAATAGCGACACCATCAATTCAAA AGGCATCAGATAAGCCCAATTTTTTCTCTTCGAAGAGAATAAACTCCTGCATTATAGCCTCCCAGAGATCTCGTGTTATTTGTTCTCTCATAATAGCTTC TCTCGTGCTTATATCATACATTGATTATCCACTGCTTGGAATTAACATAGTGAGTTCAGAGAGCATTATAGCCTCTAGGCCTCTTTACATAGTCCTGCTA ACTGATGTAACAATTGTGCTTGTCCGACTGTTTCGTGAAAGGGGAAATCATGGCAGTGAGGAATCTGAGAGAGAACGAATGGTATCTAAGGAAGATGGAG ATAACTGGGTGGGAGCAGTTAAGCTCTTGGAGAGAGGTTTGACTGTGTATCAGGCAGTCCGCGGCATCTTCATTGACTGCAGTGTTTATTTAGTTGTTGT TATCTGTGCGCTCTCTCTATTGTAG
AA sequence Show only first row Show all	>Potri.003G055200.1 pacid=42786559 polypeptide=Potri.003G055200.1.p locus=Potri.003G055200 ID=Potri.003G055200.1.v4.1 annot-version=v4.1 MVSDGKEERRRRRIVERGSDRMALITGQIQSLDSSSSQASSTTSNYSHLAHDNPSSPSTTVSQHAQIDAGSGGADYEPGSKFPKRKASNEAFEGIGFDIR NQVEQHLQERVTPTEAYSKMTEIQMSIATPSIQKASDKPNFFSSKRINSCIIASQRSRVICSLIIASLVLISYIDYPLLGINIVSSESIIASRPLYIVLL TDVTIVLVRLFRERGNHGSEESERERMVSKEDGDNWVGAVKLLERGLTVYQAVRGIFIDCSVYLVVVICALSLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52343			unknown protein		Potri.003G055200 [exp]	0	1
AT1G30910			Molybdenum cofactor sulfurase ...		Potri.003G154900 [exp]	1.00	0.9305
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Potri.014G093700 [exp]	4.12	0.8457	ATPOB1.1
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Potri.017G066300 [exp]	4.47	0.8747
AT2G04550		DSPTP1E, IBR5	DUAL SPECIFICITY PROTEIN PHOSP...		Potri.014G160500 [exp]	4.89	0.8730	Pt-IBR5.1
AT3G15750			Essential protein Yae1, N-term...		Potri.001G024000 [exp]	4.89	0.8594
AT5G10030	bZIP	OBF4, TGA4	OCS ELEMENT BINDING FACTOR 4, ...		Potri.007G079900 [exp]	5.65	0.8801	STGA1.2
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Potri.003G166500 [exp]	6.32	0.8445
AT4G12760			unknown protein		Potri.014G197700 [exp]	6.48	0.8696
AT3G21865		PEX22	peroxin 22 (.1)		Potri.017G038800 [exp]	6.70	0.8473
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Potri.001G327100 [exp]	7.54	0.8450	TCP20.1

Compare expression of checked genes

Potri.003G055200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.