Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24490 206 / 4e-63 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT1G54060 104 / 2e-24 Trihelix ASIL1 6B-interacting protein 1-like 1 (.1) AT5G05550 94 / 5e-22 Trihelix sequence-specific DNA binding transcription factors (.1.2) AT3G11100 88 / 1e-19 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G14180 89 / 5e-19 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT3G58630 74 / 2e-14 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G10030 70 / 1e-12 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT3G24860 58 / 5e-09 Trihelix Homeodomain-like superfamily protein (.1) AT3G54390 54 / 5e-08 Trihelix sequence-specific DNA binding transcription factors (.1) AT2G44730 52 / 3e-07 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G179800 [exp] 479 / 5e-169 AT3G24490 206 / 2e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.018G075500 [exp] 203 / 9e-62 AT3G24490 252 / 1e-81 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.T126206 [exp] 113 / 7e-28 AT3G14180 173 / 9e-50 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.003G200000 [exp] 112 / 1e-27 AT3G14180 172 / 2e-49 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.008G071300 [exp] 104 / 2e-25 AT5G05550 209 / 3e-67 sequence-specific DNA binding transcription factors (.1.2) Potri.001G026000 [exp] 82 / 8e-17 AT3G14180 186 / 1e-54 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.003G118600 [exp] 71 / 1e-13 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.001G113600 [exp] 70 / 3e-13 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.010G186200 [exp] 69 / 5e-13 AT5G05550 149 / 3e-44 sequence-specific DNA binding transcription factors (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025772 [exp] 309 / 1e-102 AT3G24490 223 / 3e-70 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10035893 [exp] 306 / 1e-101 AT3G24490 214 / 1e-66 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10017725 [exp] 173 / 7e-50 AT3G24490 243 / 1e-77 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10033094 [exp] 172 / 3e-49 AT3G24490 238 / 6e-76 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10019388 [exp] 163 / 1e-45 AT3G24490 200 / 2e-60 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10025404 [exp] 92 / 1e-20 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10013179 [exp] 71 / 6e-13 AT3G14180 256 / 5e-81 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015282 [exp] 66 / 1e-12 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10008141 [exp] 69 / 2e-12 AT3G14180 271 / 3e-87 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10007273 [exp] 68 / 2e-12 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G056000.1 pacid=42786069 polypeptide=Potri.003G056000.1.p locus=Potri.003G056000 ID=Potri.003G056000.1.v4.1 annot-version=v4.1 ATGGATGATACTGAAGATGATGCAAGGTACCCACCAAATCCATACGGGGAGAACAACCAGAAGAGTTATGGTTCTAATCGTCACAAACTTCTCGCGGGCA ATGCTATGTATCTTAGGGAAGTTGATGATCAATATTCCATTGATGAAGATGAGGACTCTGATGAAGAAGAAGAAGAAGATGAACATGAATTAGGAGTGGA AGATGGGGAGAATAATCAGAAAAATGGCATCCATTATGAGGGAAAAGATGTGGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTGTTGATGATGAGGAG GATGAGGATGATAATCAAAAGTACAATAGGAGGATAGACGAGGATGAGGATGATAATGAAAAGTATAATATGAGGATAGACGATGACGATGATGATGGCG ATATCGAAAGGCATCCAAAAAAGCAAAAGCTAAAGAGTTTAGTTTCAAGTTATGAATTTGCTCCTCGTGTTCCAGCACCTCATGTTGCAGTTCCAGCAGG GCCAAAACCATCAGTTGGTGGACGCAATCCGCTTACAGACTGGACTGAGCGTGAAACATTCGTTTTGCTAGATGCTTGGGGTGATAAGTTCTTGCAACGT GGGAAGAAGAGTCTTCGATCTGACGAATGGCAAGAAGTTGCAGAGAAGGTGTCAGAGAAATCAAAGATTGAGAGGACAGATACACAATGTAGGAATCGTT TGGATACATTGAAAAAGAAGTACAAGGTCGAGAAGATTAAGTTAGCAGAGGCAGGCGGTGGTGCTAGCAAATGGGTTTATTTCAAGAAGTTGGATATTCT AATGTCGACATCGGCTCAGCAAGGTGGACTCTCCTGTGGGCTGGACTCAGGAGAGTATGTTTTCATGAACTCGAAAGCATATTCAAACCATGCCAACGGA TTGGATGGGATGCGGGATAGTCCAGGGAATTCAGAATCAGCACATGATGACGATGATTCGGATGGGCTCCCACCCAAGAAGAGAAGGCTTGGAAGAGAGT CAAGAAACTGCAATGAGCAGTCCTCTTTTGGTTTGCTTGCAGATTCTATTCAGAAATTTAGTGAGATCTATGAGAAGATTGAGAGTAGTAAAAGGCAGCA GATGTTGGAACTAGAGAAGATGAAGATGGATTTTCAGAGGGATTTGGAAATGGAAAAGAGGCAAATTATTGAGAGAGCAAAGGCAGAGATAGCCAAAATT CATCAAGACAGTGAAGATGAGGACACCATGTCGGCCAATAGTGCTTAA
AA sequence Show only first row Show all	>Potri.003G056000.1 pacid=42786069 polypeptide=Potri.003G056000.1.p locus=Potri.003G056000 ID=Potri.003G056000.1.v4.1 annot-version=v4.1 MDDTEDDARYPPNPYGENNQKSYGSNRHKLLAGNAMYLREVDDQYSIDEDEDSDEEEEEDEHELGVEDGENNQKNGIHYEGKDVDEEEEEEEEEGVDDEE DEDDNQKYNRRIDEDEDDNEKYNMRIDDDDDDGDIERHPKKQKLKSLVSSYEFAPRVPAPHVAVPAGPKPSVGGRNPLTDWTERETFVLLDAWGDKFLQR GKKSLRSDEWQEVAEKVSEKSKIERTDTQCRNRLDTLKKKYKVEKIKLAEAGGGASKWVYFKKLDILMSTSAQQGGLSCGLDSGEYVFMNSKAYSNHANG LDGMRDSPGNSESAHDDDDSDGLPPKKRRLGRESRNCNEQSSFGLLADSIQKFSEIYEKIESSKRQQMLELEKMKMDFQRDLEMEKRQIIERAKAEIAKI HQDSEDEDTMSANSA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Potri.003G056000 [exp]	0	1
AT2G44430			DNA-binding bromodomain-contai...		Potri.009G023100 [exp]	1.00	0.8057	BRD908
AT1G09195			unknown protein		Potri.005G020100 [exp]	2.00	0.8026
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Potri.006G218900 [exp]	5.29	0.7377
AT5G20260			Exostosin family protein (.1)		Potri.018G125058 [exp]	8.83	0.7025
AT5G24890			unknown protein		Potri.018G008200 [exp]	9.48	0.7283
AT1G77250			RING/FYVE/PHD-type zinc finger...		Potri.005G183700 [exp]	10.48	0.7202
AT2G24960			unknown protein		Potri.002G023800 [exp]	16.52	0.6571
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.015G105300 [exp]	18.89	0.7099	Pt-ARF2.1
AT5G26610			D111/G-patch domain-containing...		Potri.013G002100 [exp]	20.00	0.6828
AT2G16940			Splicing factor, CC1-like (.1....		Potri.009G137200 [exp]	20.27	0.7562

Compare expression of checked genes

Potri.003G056000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.