Plant FIBer expression Database

Potri.003G056300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G52360 1653 / 0 Coatomer, beta' subunit (.1.2)
AT3G15980 1622 / 0 Coatomer, beta' subunit (.1.2.3.4.5)
AT1G79990 1617 / 0 structural molecules (.1.2.3.4.5)
AT2G21390 275 / 1e-77 Coatomer, alpha subunit (.1)
AT1G62020 270 / 9e-76 Coatomer, alpha subunit (.1)
AT3G49660 107 / 4e-25 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
AT5G25150 97 / 2e-20 TAF5 TBP-associated factor 5 (.1)
AT1G11160 97 / 4e-20 Transducin/WD40 repeat-like superfamily protein (.1)
AT1G48630 89 / 9e-19 RACK1B_AT receptor for activated C kinase 1B (.1)
AT1G18080 89 / 9e-19 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G179200
[exp]
1758 / 0 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2)
Potri.006G250200
[exp]
462 / 9e-156 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2)
Potri.012G074800
[exp]
265 / 7e-74 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1)
Potri.015G069700
[exp]
264 / 1e-73 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1)
Potri.007G009500
[exp]
100 / 6e-23 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Potri.006G263400
[exp]
100 / 1e-21 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1)
Potri.005G148500
[exp]
97 / 2e-21 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Potri.019G087200
[exp]
96 / 8e-21 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Potri.002G051900
[exp]
94 / 1e-20 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011467
[exp]
1533 / 0 AT1G52360 1505 / 0.0 Coatomer, beta' subunit (.1.2)
Lus10033092
[exp]
1478 / 0 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2)
Lus10037524
[exp]
1115 / 0 AT1G52360 1077 / 0.0 Coatomer, beta' subunit (.1.2)
Lus10037525
[exp]
513 / 5e-176 AT1G52360 513 / 3e-176 Coatomer, beta' subunit (.1.2)
Lus10026094
[exp]
402 / 9e-134 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5)
Lus10002324
[exp]
396 / 9e-131 AT3G15980 397 / 7e-132 Coatomer, beta' subunit (.1.2.3.4.5)
Lus10037538
[exp]
263 / 1e-75 AT2G21390 1402 / 0.0 Coatomer, alpha subunit (.1)
Lus10011454
[exp]
269 / 3e-75 AT1G62020 2098 / 0.0 Coatomer, alpha subunit (.1)
Lus10040752
[exp]
261 / 1e-72 AT1G62020 2133 / 0.0 Coatomer, alpha subunit (.1)
Lus10025780
[exp]
260 / 1e-72 AT2G21390 1521 / 0.0 Coatomer, alpha subunit (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF00400 WD40 WD domain, G-beta repeat
CL0186 Beta_propeller PF04053 Coatomer_WDAD Coatomer WD associated region
Representative CDS sequence
>Potri.003G056300.9 pacid=42787301 polypeptide=Potri.003G056300.9.p locus=Potri.003G056300 ID=Potri.003G056300.9.v4.1 annot-version=v4.1
ATGCCTCTCAGACTCGAAATCAAGAGGAAACTTGCTCAAAGATCGGAGAGAGTAAAGTCAGTCGATCTACATCCAACAGAACCATGGATTCTAGTGAGTT
TGTATTCAGGGACTGTGTGTATTTGGAACTACCAGTCACAGACCATGGCGAAGTCTTTTGAGGTCACTGAGTTGCCAGTTAGGTCAGCCAAGTTCATAGC
ACGAAAGCAGTGGGTTGTTGCTGGAGCTGATGACATGCATATTCGTGTGTACAACTACAACACAATGGATAAGATTAAAGTTTTTGAGGCTCATACAGAT
TACATTAGATGTGTGGCCGTCCATCCTACCCTTCCCTATGTGTTGTCATCATCTGATGACATGCTTATAAAACTTTGGGACTGGGAGAAGGGATGGGCTT
GTACTCAGATATTTGAGGGACATTCCCATTATGTGATGCAAGTTACTTTTAATCCTAAAGACACCAACACTTTTGCAAGTGCATCCCTTGATCGCACCAT
AAAGATTTGGAATCTTGGCTCTCCCGACCCAAATTTTACTCTGGATGCTCACCAGAAAGGAGTAAATTGTGTTGATTACTTTACAGGTGGAGATAAACCT
TATTTAATCACTGGTTCTGATGATCACACTGCGAAGGTATGGGATTATCAAACGAAAAGCTGTGTCCAGACCTTAGAAGGCCACACACACAATGTCTCTG
CTGTATGTTTTCATCCTGAAATTCCAATAATAATTACAGGTTCTGAAGATGGGACTGTTCGTATATGGCATTCAACAACTTACAGGCTTGAGAACACCTT
GAATTATGGCTTGGAACGAGTTTGGGCTGTTGGATACATGAAAGGTTCACGCCGTGTTGTGATTGGGTATGATGAAGGAACCATTATGGTCAAGATCGGC
CGAGAAGAACCTGTGGCTAGCATGGACAATAGTGGAAAGATTATATGGGCGAAGCACAATGAAATTCAAACTGTGAACATTAGGAGTGTGGGGGCAGATT
TTGAGGTGACTGATGGTGAAAGATTGCCTTTGGCTGTTAAGGAGTTGGGAACATGTGATCTTTACCCCCAAAGTTTAAAACACAATCCCAATGGGAGGTT
TGTTGTTGTTTGTGGAGATGGTGAGTACATCATATATACAGCTTTAGCATGGAGAAACAGATCATTTGGTTCTGCACTTGAATTTGTTTGGTCTTCGGAT
GGTGAATATGCTGTTAGAGAAAGTACATCAAAGATTAAGATTTTCAGCAAAAATTTCCAGGAAAAGAAGAGTGTCCGGCCAACCTTTTCAGCTGAGCGTA
TTTATGGAGGAACCCTGTTGGCCATGTGCTCAAATGATTTTATTTGTTTCTATGACTGGGCTGAATGCAGGTTGATTAGGAGAATTGATGTTACTGTGAA
AAATCTCTATTGGGCTGATAGTGGAGATTTAGTGGCCATTGCTAGTGATGCATCATTCTACATCCTCAAATACAATCGTGACATAGTTTCATCTTATTTA
GATAGTGGAAAACCTGTGGATGAACAAGGTGTTGAGGATGCATTTGAGCTTCTCCATGAAACCAATGAACGTGTCAGAACTGGCTTATGGGTTGGGGATT
GTTTCATATACAATAACTCCTCCTGGAGGCTCAATTACTGTGTTGGAGGCGAGGTGACCACCATGTATCATTTGGACCACCCCATGTACTTGCTTGGGTA
CCTTGCTAGTCAAAGTCGGGTGTATTTGATAGACAAAGAATTCAATGTCACGGGGTACACTTTACTTCTTAGCTTAATTGAGTACAAGACTCTGGTGATG
CGGGGAGATCTGGAGAGGGCCAGTGAACTCTTACCTTCAATTCCTAAAGAACATCATAATAGTGTGGCACATTTCTTGGAATCACGAGGTATGATAGAGG
ATGCTCTGGAAGTAGCTACTGACCCTGATTATAGATTTGAGCTAGCTATACAGCTTGGTAGATTAGAGGTTGCAAAGGAAATTGCCATTGAAGTGCAGAG
TGAGTCAAAATGGAAACAGTTGGGAGAGTTAGCTATGTCCAATGGAAAGTTGGAAATGGCTGAGGAATGCATGAAGCACGCAACAGACTTGAGTGGTTTG
CTGCTGCTGTATTCTTCCTTAGGAGATGCTGAAGGGATATCAAAGCTTGGATCCCTGGCAATAGAACAGGGGAAGATTAATGTTGCATTCCTTTGTTTAT
TCATGTTGGGCAAAGTTGAAGACTGCCTCCAGCTGTTGGTGGAACGCAATCGGATACCTGAGGCTGCTTTGATGGCACGATCTTATCTTCCCAGCAAGGT
TTCAGAGATTGTGGCGCTTTGGAGGAAAGACCTGAACAAGGTTAATCCAAAAGCTGCTGAATCTCTGGCTGATCCTGAAGAATATCCAAATATGTTTGAT
GATTGGCAAATTGCGTTATCTGTTGAATCTAGAGCTGCAGAAACAAGGGGCGTGTATCCTCCTGCAGAGGACTACCAAACACATGCTGATAAACCTCACA
TCACCCTTGTGGAGGCTTTCAGAAACATGCAAATAGAAGAGGAGGAACCTCTTGAAAATGGAGACTTTGATCATGAGGCCGAAGAAGAGAATGGAGATGA
ACAGAATGGCGAAGAAGGGAGCCAAGAGGAAGCAGTTGTGGTGGATGCAGAGTCCACGGATGGTGCTGTACTCGTTAATGGAAACGAGCCTGAGGAAGAG
TGGGGTACGAATAATGAAGGAACCCCGTCAGCCTAA
AA sequence
>Potri.003G056300.9 pacid=42787301 polypeptide=Potri.003G056300.9.p locus=Potri.003G056300 ID=Potri.003G056300.9.v4.1 annot-version=v4.1
MPLRLEIKRKLAQRSERVKSVDLHPTEPWILVSLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARKQWVVAGADDMHIRVYNYNTMDKIKVFEAHTD
YIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKP
YLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEIPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAVGYMKGSRRVVIGYDEGTIMVKIG
REEPVASMDNSGKIIWAKHNEIQTVNIRSVGADFEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSD
GEYAVRESTSKIKIFSKNFQEKKSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDASFYILKYNRDIVSSYL
DSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMYHLDHPMYLLGYLASQSRVYLIDKEFNVTGYTLLLSLIEYKTLVM
RGDLERASELLPSIPKEHHNSVAHFLESRGMIEDALEVATDPDYRFELAIQLGRLEVAKEIAIEVQSESKWKQLGELAMSNGKLEMAEECMKHATDLSGL
LLLYSSLGDAEGISKLGSLAIEQGKINVAFLCLFMLGKVEDCLQLLVERNRIPEAALMARSYLPSKVSEIVALWRKDLNKVNPKAAESLADPEEYPNMFD
DWQIALSVESRAAETRGVYPPAEDYQTHADKPHITLVEAFRNMQIEEEEPLENGDFDHEAEEENGDEQNGEEGSQEEAVVVDAESTDGAVLVNGNEPEEE
WGTNNEGTPSA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G52360 Coatomer, beta' subunit (.1.2) Potri.003G056300
[exp]
0 1
AT1G52360 Coatomer, beta' subunit (.1.2) Potri.001G179200
[exp]
1.00 0.9753
AT1G62020 Coatomer, alpha subunit (.1) Potri.015G069700
[exp]
2.82 0.9390
AT1G71270 ATVPS52, TTD8, ... T-DNA TRANSMISSION DEFECT 8, P... Potri.006G027100
[exp]
3.87 0.9489 Pt-POK.1
AT2G07360 SH3 domain-containing protein ... Potri.018G149400
[exp]
3.87 0.9284
AT3G50590 Transducin/WD40 repeat-like su... Potri.007G041000
[exp]
4.47 0.9312
AT3G05420 ACBP4 acyl-CoA binding protein 4 (.1... Potri.013G018800
[exp]
6.48 0.9545
AT4G24840 unknown protein Potri.012G096100
[exp]
7.87 0.9156
AT5G64570 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XY... Potri.003G022900
[exp]
8.48 0.9258 XYL4.3
AT3G11130 Clathrin, heavy chain (.1) Potri.009G073300
[exp]
8.71 0.9255
AT5G15470 GAUT14 galacturonosyltransferase 14 (... Potri.004G124500
[exp]
10.24 0.9104

Potri.003G056300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.