Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52380 225 / 6e-68 NUP50 (Nucleoporin 50 kDa) protein (.1) AT3G15970 216 / 2e-64 NUP50 (Nucleoporin 50 kDa) protein (.1) AT2G30060 47 / 8e-06 Pleckstrin homology (PH) domain superfamily protein (.1) AT5G58590 46 / 2e-05 RANBP1 RAN binding protein 1 (.1) AT1G07140 42 / 0.0007 SIRANBP Pleckstrin homology (PH) domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G179100 [exp] 599 / 0 AT1G52380 326 / 4e-107 NUP50 (Nucleoporin 50 kDa) protein (.1) Potri.009G073400 [exp] 55 / 3e-08 AT5G58590 267 / 3e-91 RAN binding protein 1 (.1) Potri.001G278900 [exp] 52 / 3e-07 AT5G58590 263 / 6e-90 RAN binding protein 1 (.1) Potri.006G102400 [exp] 52 / 4e-07 AT5G58590 260 / 2e-88 RAN binding protein 1 (.1) Potri.016G119800 [exp] 49 / 4e-06 AT5G58590 265 / 2e-90 RAN binding protein 1 (.1) Potri.009G060901 [exp] 0 / 1 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037931 [exp] 242 / 5e-74 AT3G15970 343 / 7e-114 NUP50 (Nucleoporin 50 kDa) protein (.1) Lus10038663 [exp] 121 / 3e-31 AT1G52380 100 / 1e-24 NUP50 (Nucleoporin 50 kDa) protein (.1) Lus10035655 [exp] 44 / 0.0002 AT5G58590 267 / 4e-91 RAN binding protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF00638 [poplar] [flax] Ran_BP1 RanBP1 domain CL0266 [poplar] [flax] PF08911 [poplar] [flax] NUP50 NUP50 (Nucleoporin 50 kDa)
Representative CDS sequence Show only first row Show all	>Potri.003G056400.8 pacid=42785472 polypeptide=Potri.003G056400.8.p locus=Potri.003G056400 ID=Potri.003G056400.8.v4.1 annot-version=v4.1 ATGGGGGATGCAGAAAATGCCCTTCCTTCTTCTAAGAAGAGGGCTGCTAGCAGTGAGATCTCCAGAGACAACCCTGGTCTTGATGATGATGGCTCTGTCG AGCAAGAAACTGGAACTTTCAAGAAAGCCAGTGATGAGGTACTGGCAAGAAGAAAAATTGTGAAAGTTCGTCGCAGTCAAACCACTTCAACTCCGTCATC CAATCCATTTGCTGGCATTCGCCTGGTTCCTCCGACTGAGCCAATTGCAGCCCCTGCTGTAGCCACGATTGAAGTAGTTAGTGCTAGGCAGCAAGTGTCA GAAGAAGGCCAAAGTGATACTTGTGAGGAGGTTGAAAAGGGTAAAGGCGAGAAGAGTGAGCTGTCAGAGAGTGAGATTGATAAGCCTGTGGCTGAAGTTG CCACATGTAAGACTGATGAGCCAGTGGCTGAGACTGCTGTGGACAAGGTGAGCGTGGAAGATAAGGGAAAAGCTGTAGATAAGCCAGTGACTGAAATTTC TGAAGATGAGGAGAAGAGTAAGGAGTCAGAGGGCAAGACTGATGAGCCAGTGGCTGAGACTGCTGTGGACAAGGTGAGCGTGGAAGATAAGGGAAAAGCC GTAGATAAGCCAGTGACTGAAATTTCTAAAGATGAGGAGAAGAGTAAGGAGTCAGAGGGCAAGACTGATGAGCCAGTGGCTGAGAATGCTATTGAAAAGG AGAGTTCAGAAGACAAGGGAATTAATAGTGCAGTCAATGAGGCAACTGAATTGAAGGTAGATAATGAGAAACCAGCTGAAGATGAGACTGAGAAAGAAAA TGCAGGAGGTGATGACACAGAAAATCAAGATAAGAAGGATAATGGTAATGAAATTGTTTATCCAAGCACCGAAGGTGCCCCTCTGAACTCATTCCAACAG CTTTCAAGTAGCCAAAATGCTTTCACAGGGCTTGCTGGAACTGGGTTTTCCACCAGTACATTCACCTTTGGTTCAGTTCCTAAGGATGGTTCTGTACTGG GTAGTGGTTCTGGTTCTCTGTTTGGGCAGAAAAATGAACAACCTTCATTTGGATTTGGTCTCTCTAACAATGGAAGTTCTTCACTGTCTTCTGTTGTCTC AAAGACCGAGGGGAGTGGTTTTCCATCTATGCAGGAGGTTCCAGTTGAGACAGGGGAAGAGAATGAAAGAGTGGTTTTCTCTGCTGATTCAGTGTTGTTT GAATTTCTCGATGGTGGCTGGAAGGAGCGTGGAAAGGGAGAACTCAAGGTCAATGTATCGGCTGCTGGGGCTGAAAGAGCCAGACTTCTAATGAGAGCTA GGGGTCATTTTAGGTTGATTTTGAATGCAAGTCTTTATCCTGACATGAAGCTTGCAAATATGGACAAGCGAGGTATCACTTTTGCATGCATGAATAGTAT CGGTGAAGGTAAGGACAGCCTTTCCACTTTCGCACTGAAGTTCAAAGATGGTTCCATCGTGGAAGAGTTTTGTGCAGCTGTCACTGCACATAAAGATAAA GCACCTGCAGTTATGAAGACTCCAGAGAATTCACCAAAGGCTTCTTCTGACGAGTGA
AA sequence Show only first row Show all	>Potri.003G056400.8 pacid=42785472 polypeptide=Potri.003G056400.8.p locus=Potri.003G056400 ID=Potri.003G056400.8.v4.1 annot-version=v4.1 MGDAENALPSSKKRAASSEISRDNPGLDDDGSVEQETGTFKKASDEVLARRKIVKVRRSQTTSTPSSNPFAGIRLVPPTEPIAAPAVATIEVVSARQQVS EEGQSDTCEEVEKGKGEKSELSESEIDKPVAEVATCKTDEPVAETAVDKVSVEDKGKAVDKPVTEISEDEEKSKESEGKTDEPVAETAVDKVSVEDKGKA VDKPVTEISKDEEKSKESEGKTDEPVAENAIEKESSEDKGINSAVNEATELKVDNEKPAEDETEKENAGGDDTENQDKKDNGNEIVYPSTEGAPLNSFQQ LSSSQNAFTGLAGTGFSTSTFTFGSVPKDGSVLGSGSGSLFGQKNEQPSFGFGLSNNGSSSLSSVVSKTEGSGFPSMQEVPVETGEENERVVFSADSVLF EFLDGGWKERGKGELKVNVSAAGAERARLLMRARGHFRLILNASLYPDMKLANMDKRGITFACMNSIGEGKDSLSTFALKFKDGSIVEEFCAAVTAHKDK APAVMKTPENSPKASSDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52380			NUP50 (Nucleoporin 50 kDa) pro...		Potri.003G056400 [exp]	0	1
AT3G17970		ATTOC64-III	translocon at the outer membra...		Potri.015G038600 [exp]	1.73	0.8270	AMI3,TOC64.2
AT3G54470			uridine 5'-monophosphate synth...		Potri.001G026300 [exp]	8.30	0.8193
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Potri.005G059700 [exp]	12.44	0.8069
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Potri.010G023100 [exp]	16.55	0.8257	Pt-CARB.1
AT3G49080			Ribosomal protein S5 domain 2-...		Potri.012G144700 [exp]	18.33	0.7744
AT4G38890			FMN-linked oxidoreductases sup...		Potri.009G125500 [exp]	20.29	0.8114
AT2G34040			Apoptosis inhibitory protein 5...		Potri.011G062500 [exp]	20.71	0.7513
AT4G10070			KH domain-containing protein (...		Potri.019G072500 [exp]	22.58	0.8032
AT1G64880			Ribosomal protein S5 family pr...		Potri.013G076200 [exp]	25.00	0.7632
AT1G18485			Pentatricopeptide repeat (PPR)...		Potri.015G047600 [exp]	43.49	0.7452

Compare expression of checked genes

Potri.003G056400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.