Plant FIBer expression Database

Potri.003G056450 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025765
[exp]
49 / 2e-07 AT1G60560 1112 / 0.0 SWIM zinc finger family protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.003G056450.1 pacid=42786647 polypeptide=Potri.003G056450.1.p locus=Potri.003G056450 ID=Potri.003G056450.1.v4.1 annot-version=v4.1
ATGGAGGCAAGGCGGATTGGGTCTCTCTATGTGGTGTTTTTGGTCGTGGTTTTGCTTGCAGGACAGTGCACAGCCTCTTTTGATGATTGCTACAAAGGCT
GCTTCCTCTCGTGTGCCATCTCCCCTGACAACTTCATATTACTGGTCACCAGTGCTTTAAGAAGTTTGAAAGATTGCATCTTCAACTTTTCGTCGCCAGG
CCATCACTCTCGCAGCATGGGCTGTGCTTACTCTTCTTGTTCCCACATCAGCGCAAGAGATAACCCCCGTAATTCTCTCTTTTTCATAGAGTTAAATTTT
GAAACTATCCATGAAAGTAAAGAGAATTTTGATGCTATAACAGCAAAAAGTATAAATTGA
AA sequence
>Potri.003G056450.1 pacid=42786647 polypeptide=Potri.003G056450.1.p locus=Potri.003G056450 ID=Potri.003G056450.1.v4.1 annot-version=v4.1
MEARRIGSLYVVFLVVVLLAGQCTASFDDCYKGCFLSCAISPDNFILLVTSALRSLKDCIFNFSSPGHHSRSMGCAYSSCSHISARDNPRNSLFFIELNF
ETIHESKENFDAITAKSIN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G056450
[exp]
0 1
AT5G66815 unknown protein Potri.014G034500
[exp]
4.47 0.9333
Potri.003G056850
[exp]
5.19 0.8805
Potri.019G005913
[exp]
5.47 0.8965
AT3G21420 LBO1 LATERAL BRANCHING OXIDOREDUCTA... Potri.010G023550
[exp]
7.48 0.8839
AT3G02310 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K... Potri.017G099700
[exp]
7.61 0.7100
AT4G32810 MAX4, CCD8, ATC... MORE AXILLARY BRANCHING 4, car... Potri.018G044100
[exp]
7.93 0.8927
AT2G34010 unknown protein Potri.004G052900
[exp]
8.12 0.6977
AT5G62065 Bifunctional inhibitor/lipid-t... Potri.015G142100
[exp]
8.36 0.8608
AT3G21420 LBO1 LATERAL BRANCHING OXIDOREDUCTA... Potri.010G023600
[exp]
10.48 0.8540
AT4G29035 Plant self-incompatibility pro... Potri.016G066900
[exp]
10.72 0.7366

Potri.003G056450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.