Plant FIBer expression Database

Potri.003G056500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G15280 152 / 4e-39 CASC3/Barentsz eIF4AIII binding (.1.2)
AT1G80000 144 / 5e-36 CASC3/Barentsz eIF4AIII binding (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G178900
[exp]
794 / 0 AT1G80000 272 / 3e-82 CASC3/Barentsz eIF4AIII binding (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011468
[exp]
458 / 4e-153 AT1G80000 281 / 9e-86 CASC3/Barentsz eIF4AIII binding (.1.2)
Lus10037523
[exp]
450 / 3e-143 AT1G52420 770 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09405 Btz CASC3/Barentsz eIF4AIII binding
Representative CDS sequence
>Potri.003G056500.5 pacid=42785547 polypeptide=Potri.003G056500.5.p locus=Potri.003G056500 ID=Potri.003G056500.5.v4.1 annot-version=v4.1
ATGACTAAGGTTGGCGAGGAGGAAATTGTATATGAGAGTGATCCCGAGGAAGAGAAGCGATTGCTTGTAAGGAGAAGAAGAGAAGCTGCGAGCGACGACG
AGGAAGGTGAAGGAGAAGAGAAGCCTAGAAATAATCGGAGGGCTCCAATTCACTCCGATGAATCTGACGGTCAGGGTGGCGCTGCAGACTATGACGACGA
CGAAGAAGAGGCATTAAATGAAGAGGAAGATGAAGAAGATGGTGTTTTTGAAGATGAAGAGGAAGAAGAGGTTTATGAAGAAGAGGAAGGGAAAGAAGGG
AATAAGGAGGGAGTAGGAGGCAGCGGCAATGCTGGGGTTGAGGTTAGGGAGAAGGACATCGAGGGGAGGAAGGAGCAGGTGGGAGGAGAGGAGAAAGTGG
AGGGGGAGGAAGGGGAAGAGGGGAAGAAGGGGAACCAGCCTTTTGCGGTGCCTACTGCTGGGGCTTTTTACATGCACGATGACAGGTTTAGGGACAGTGC
TGGTGGTCGGCACAGGCGAACCTTTGGTGGAAGGAATTTGTGGGAGTCCAAAGATGATAAGAAATGGGGGCATGACAAGTTTGAGGAGATGACATCGCAG
GAAAGGCATTATGAACAGGGAAGGAGGACTGCTAAAGGTAATTTTCGGGCCCGTGGTGGTAAAAGTCGAGGTCCAGAATGGGGATATGCCAGACGGAACA
GGTCTAACTCATTCAGCGATGGTAACAATCAGAACCAGGCACCAAAAGTTGTGAGAGGGAGAGGACCCAGAAAGTTTGAATCTACTTTCAAGAGTCGCAG
AGAGACGCCTCCAGTGCAAAACAAACAGCCTGGGAAACCCCTTGAGAAACGTTCACATGGTAGTTCAGGGAGAATTTTGACATCTTTGTCAAATACAGAA
TCTGATGAATTGCCCACTAGAAAACATTCAAGCTTGAGCTCTGCTTCTCCTCCCTTCTATCCTTCCGGATCTTCAAATAAAGACATCACTTCAAGTCAAA
AAAGGGATATACATGGTGCAAGCACAAGCAAGAATCTTCGCACTCCTGTTATAGATGAGAATTTTCCTATGCAACAACACAGTGCATTGGTGCGGGGGAA
GAATATAGCCGACTCTGTTTCAATAGACAAGCTTTATATTGACGATTCCATCACTCCGGCAGCAGGAAAGCCTTTGAGCAATATGCAAATGCCACCTTCT
GGATCTTCTGTGGTCAATTCTATTACATCTTCACAATCCAGGGCTCAAGGAAGGAGTGCAGCCATGTCAAGCCAGATGACTTACCAGGGAGCTCCGCAGC
AGAACCAAATCAACAAAACCTCTCCCACTGCGCCGATCCACTCTCTTCAGCGAATTCCTGCTCAAAACCGTATTCAACCTTCTGCCCAGCAGTTAGTCCA
ACATCCTAGTAGCGATTCTCCAGCCTCTTCTCCACCAAAAACTGCTTTGTCACAAAATTCTTATGAAGCTGTTGAAGCAGAGGCTGCTGTGGAATCAAGT
AAATCCAGAAATGCATTGGTTGGAAAGGGAAAAGGCATAATTCAAGGAAATGGAAGAGGATCTTTTCTTTATGGTGGGACACAGGTTGTGGGAGCCACAG
GGAATATTAGTGTTGGGCATGGTGATCAGAACTTCTCTGGAACACCAACCTTTTTGCCAGTTATGCAATTTGGTGGTCAGCATCCTGGTGGTCTTGGAGT
TCCTGCGGTTGGCATGGCATTTCCTGGATATGTTGCTCAGCCTCAACTTGGCTTAGGGAATTCTGAAATGACATGGTTACCAGTTCTGGCTGGTGCTGCT
GGAGCTTTAGGGGCTACATATTGTTCACCTTATATTTCGGTTGATGGTGCTTATCATGCTCGCCCATCTGGGAAAACATCTTCCTTGGGTTCCTCAAGCA
AAGAAAGTAGTACTAATATACCCAATAATGAATGGAAGAATACACAGAGACCTGAATTTGCAAGTGATGAATTTGGACAGCGACAAAAACCTCGCAGATA
CTCAGAGATGGATTTTAAGCAGCCAAGTACAAGCACTTAG
AA sequence
>Potri.003G056500.5 pacid=42785547 polypeptide=Potri.003G056500.5.p locus=Potri.003G056500 ID=Potri.003G056500.5.v4.1 annot-version=v4.1
MTKVGEEEIVYESDPEEEKRLLVRRRREAASDDEEGEGEEKPRNNRRAPIHSDESDGQGGAADYDDDEEEALNEEEDEEDGVFEDEEEEEVYEEEEGKEG
NKEGVGGSGNAGVEVREKDIEGRKEQVGGEEKVEGEEGEEGKKGNQPFAVPTAGAFYMHDDRFRDSAGGRHRRTFGGRNLWESKDDKKWGHDKFEEMTSQ
ERHYEQGRRTAKGNFRARGGKSRGPEWGYARRNRSNSFSDGNNQNQAPKVVRGRGPRKFESTFKSRRETPPVQNKQPGKPLEKRSHGSSGRILTSLSNTE
SDELPTRKHSSLSSASPPFYPSGSSNKDITSSQKRDIHGASTSKNLRTPVIDENFPMQQHSALVRGKNIADSVSIDKLYIDDSITPAAGKPLSNMQMPPS
GSSVVNSITSSQSRAQGRSAAMSSQMTYQGAPQQNQINKTSPTAPIHSLQRIPAQNRIQPSAQQLVQHPSSDSPASSPPKTALSQNSYEAVEAEAAVESS
KSRNALVGKGKGIIQGNGRGSFLYGGTQVVGATGNISVGHGDQNFSGTPTFLPVMQFGGQHPGGLGVPAVGMAFPGYVAQPQLGLGNSEMTWLPVLAGAA
GALGATYCSPYISVDGAYHARPSGKTSSLGSSSKESSTNIPNNEWKNTQRPEFASDEFGQRQKPRRYSEMDFKQPSTST

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G15280 CASC3/Barentsz eIF4AIII bindin... Potri.003G056500
[exp]
0 1
AT3G52660 RNA-binding (RRM/RBD/RNP motif... Potri.004G201900
[exp]
2.44 0.8316
AT2G13370 CHR5 chromatin remodeling 5 (.1) Potri.001G253400
[exp]
3.31 0.8686
AT1G07990 SIT4 phosphatase-associated fa... Potri.009G014700
[exp]
3.60 0.8112
AT2G23460 ATXLG1, XLG1 extra-large G-protein 1 (.1) Potri.005G131200
[exp]
4.69 0.8158 XLG.1
AT4G15880 ATESD4, ESD4 EARLY IN SHORT DAYS 4, Cystein... Potri.008G221500
[exp]
5.65 0.8040 Pt-ESD4.1
AT3G05670 RING/U-box protein (.1) Potri.005G021000
[exp]
6.00 0.8284
AT5G53930 unknown protein Potri.011G115900
[exp]
6.32 0.8313
AT1G03350 BSD domain-containing protein ... Potri.015G050700
[exp]
6.92 0.8129
AT2G25760 Protein kinase family protein ... Potri.001G189100
[exp]
7.14 0.8038
AT4G21670 FRY2, FLP1, ATC... FIERY 2, C-terminal domain pho... Potri.004G040000
[exp]
8.36 0.8289

Potri.003G056500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.