Plant FIBer expression Database

Potri.003G056600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G15660 230 / 2e-65 CENP-C CENP-C HOMOLOGUE, centromere protein C (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G178200
[exp]
963 / 0 AT1G15660 125 / 2e-29 CENP-C HOMOLOGUE, centromere protein C (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011470
[exp]
445 / 3e-146 AT1G15660 226 / 8e-64 CENP-C HOMOLOGUE, centromere protein C (.1)
Lus10023105
[exp]
404 / 6e-130 AT1G15660 232 / 5e-66 CENP-C HOMOLOGUE, centromere protein C (.1)
PFAM info
Representative CDS sequence
>Potri.003G056600.2 pacid=42786709 polypeptide=Potri.003G056600.2.p locus=Potri.003G056600 ID=Potri.003G056600.2.v4.1 annot-version=v4.1
ATGACGGAACTGGAGGATCCGCTGCAGGGATACAGCGGATTGTCTCTCTTCCGAAGAACATTAGGCTCTCTTCCTAAGCCTACTAATGATCCCGATGATC
TTCTCTCCGCCCACAATCTCCTCAAATCCCTGCCGGTCAAAAATCCGGATAAACTTATAGAGCAGGCGAGAAGTATTTTAGATGCTACTCCAGAACCTAC
CAATGCCGACTTGCCAAATGGGGTAATGCCTGAAGATAAAAGTGAAGTTGTTGCTCAGAAGGATGCAGAAAGTCCCCGGGCACGAAGGCCAGGTTTAGGG
CGCAAGCGTGCTCGGTTTTCCTTGTTTCCCAATGCAAGTCAACCTACTGTGAATTTGGAACCAACTTTGGATATTGATAGCCTGAAAGACCCAGAGCAAT
TTTTCTTGGCTTTTGAAAGGCTTGAAGATGCTAAAAAAGAAATGGCAAAGCAGACAGGTCGTGTTTCAATTGGTTCGAATCAATCCAGAGCATCAATGGC
TCCACGCCATCGTCGACCTGGAATGCCTGGGAGATCTAGGACAGCTAAATATCAACACCTTTATCCAACCATGTCCTCCCAGGAAACCTTTATGGAGAAG
ATTCTTAGTCCAGCTAATCCTGGATCACAACAAGAAACATTCAGTCCAGATGTTGCATCACAACTAAGGGAATCAACAAATCTTGTCCCAGAAGAATCAG
GACTAGCTGGTTCAATGGCCAAGGCTGAGAAAAGGGTTGATAAACTTCTAGATGAGTTGCTTTCTCGTGATTATGAAGAGCTTGATGGGGATGGAGCAGT
CACTTTGTTACGGGACTGCTTGCAGGTCAAGGCACTTGACCTAGAGAAGTTGAGCCTCCCTGAATTGCTGAATGTGCAAAAGACCAGTTTGAATGCTTTG
GGGGGGAATTTGCCAAAGCCTAGGAATGTATTATCAGACATACATAATTTACCGAGAAGGACTATAACTCCTATGAGGCAGCAAATTGCAGGAAATTCTT
CTTGTAGTTTTGGTTCGCCCACTCCACCAAAAAGTCCATTGGCTTCGCTAGCGTTATTGAGGAAACGCATACTGCAGTCAAATCCACCAACTGATCCATT
TTCAGTTTTTGATGTTGATCAGTCACCAGAAACAAATGCTTCTTCACTTAAAAACATCAACAATTCCTCTGATCCAGTTGACATTGAAAATGACTTGAGC
CTGCTGAAATCTCTAATAATTGAAGAAGATGACACTACAGCTGGTAATACTAGTCCAGTTCACGTGGCTATTGGAGATTCTGGAACTGAAACAGATAAAT
CTCTAAATGACAACTTGACTAGTCCTGGTTCTGGTAGTGATGGTTGTCCTAGCAGGTCTAGTGCTGAGGTTAAGAATAGAGATGTTGGTGCAGATAATGT
CATCATAGATGAGAATTCAAGTCAGCTTGGTGGTGATATGGATATTCAAACAAAAGGGCCAAATGCAGTGGAGGACATGGTGGAGGATATGCAGCATAAA
ACAGTAGATAAATCTCTGAATGACAATTTGATTAGTCTTGGTCCTAGTAATGATGTTTGTTGTAGCAAATCTAGTGCTGAGGTGGAGAGTGGCAGCCCTG
GTGTGGATAATGGGGTAATAGATGATAATTTAAGTCAGATTGGTGGTGATGTGGATATTCAAACAAACAGGCCAAATGAACTGGAGGACATGGTGGAAGA
TATTCAGCAGAAAGCTGTGGATTCTACCCAGCCTGATGACACAGCCATGGAGTTTTTGAACAACGCACAGGATCAGTTTGCAGAACAATTAAGTCCTGCA
GTTGTTGAAGACCATGCAATGGATGGTTGCCCCGAAACCCAAGACAGTGGCCTAGAACAAACCAAAGACAATTGTCCAGAGCATCAGGATGAGACAGTTG
AGGAACCTCCTGTGGTATCACTAAATAAACAAGCCAAAGCAAAATCTCATACAGCCAAAGGACGCAAGAATGGATCACTCTCTAAGAGGCATAGCCTTGC
AGCTTCTGGTACATCATGGGAAACAGGACTGAGGCGAAGCACCAGGATTAGATCAAGACCTTTGGAGTATTGGAAAGGGGAAAGGTTTTTATATGGCCGC
ATTCATGGGAGTTTGGCTACTGTAATAGGGATAAAGTACGAGTCTCCAGGAAATGATAAAGGAAAACGTGCTCTGAAGGTGAAGTCTTATGTCTCTGATG
AATACAAGGATTTGGTTGAACTAGCTGCTCTGCATTGA
AA sequence
>Potri.003G056600.2 pacid=42786709 polypeptide=Potri.003G056600.2.p locus=Potri.003G056600 ID=Potri.003G056600.2.v4.1 annot-version=v4.1
MTELEDPLQGYSGLSLFRRTLGSLPKPTNDPDDLLSAHNLLKSLPVKNPDKLIEQARSILDATPEPTNADLPNGVMPEDKSEVVAQKDAESPRARRPGLG
RKRARFSLFPNASQPTVNLEPTLDIDSLKDPEQFFLAFERLEDAKKEMAKQTGRVSIGSNQSRASMAPRHRRPGMPGRSRTAKYQHLYPTMSSQETFMEK
ILSPANPGSQQETFSPDVASQLRESTNLVPEESGLAGSMAKAEKRVDKLLDELLSRDYEELDGDGAVTLLRDCLQVKALDLEKLSLPELLNVQKTSLNAL
GGNLPKPRNVLSDIHNLPRRTITPMRQQIAGNSSCSFGSPTPPKSPLASLALLRKRILQSNPPTDPFSVFDVDQSPETNASSLKNINNSSDPVDIENDLS
LLKSLIIEEDDTTAGNTSPVHVAIGDSGTETDKSLNDNLTSPGSGSDGCPSRSSAEVKNRDVGADNVIIDENSSQLGGDMDIQTKGPNAVEDMVEDMQHK
TVDKSLNDNLISLGPSNDVCCSKSSAEVESGSPGVDNGVIDDNLSQIGGDVDIQTNRPNELEDMVEDIQQKAVDSTQPDDTAMEFLNNAQDQFAEQLSPA
VVEDHAMDGCPETQDSGLEQTKDNCPEHQDETVEEPPVVSLNKQAKAKSHTAKGRKNGSLSKRHSLAASGTSWETGLRRSTRIRSRPLEYWKGERFLYGR
IHGSLATVIGIKYESPGNDKGKRALKVKSYVSDEYKDLVELAALH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G15660 CENP-C CENP-C HOMOLOGUE, centromere p... Potri.003G056600
[exp]
0 1
AT1G73880 UGT89B1 UDP-glucosyl transferase 89B1 ... Potri.012G065100
[exp]
4.24 0.9320
AT1G79230 STR1, ATRDH1, A... ARABIDOPSIS THALIANA RHODANESE... Potri.005G095300
[exp]
7.14 0.9404 Pt-MST2.1
AT4G39470 Tetratricopeptide repeat (TPR)... Potri.007G079200
[exp]
9.00 0.9294
AT3G24800 PRT1 proteolysis 1 (.1) Potri.001G049300
[exp]
9.38 0.9444
AT1G09700 DRB1, HYL1 HYPONASTIC LEAVES 1, DSRNA-BIN... Potri.017G126700
[exp]
11.22 0.9127
AT3G62130 LCD L-cysteine desulfhydrase, Pyri... Potri.002G187200
[exp]
11.61 0.9120
AT4G37920 unknown protein Potri.007G000400
[exp]
12.04 0.9445
AT1G28310 DOF AtDof1. 4 Dof-type zinc finger DNA-bindi... Potri.011G055600
[exp]
18.11 0.8929
AT4G36910 CBSX1, CDCP2, L... LOSS OF THE TIMING OF ET AND J... Potri.005G140800
[exp]
18.65 0.9338
AT4G16580 Protein phosphatase 2C family ... Potri.005G125700
[exp]
18.97 0.9214

Potri.003G056600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.