Plant FIBer expression Database

Potri.003G056700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80410 1285 / 0 OMA, EMB2753 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G178000
[exp]
1557 / 0 AT1G80410 1332 / 0.0 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Potri.001G177700
[exp]
734 / 0 AT1G80410 613 / 0.0 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Potri.001G177802
[exp]
69 / 1e-14 AT1G80410 61 / 4e-13 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011474
[exp]
1358 / 0 AT1G80410 1341 / 0.0 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Lus10023111
[exp]
1355 / 0 AT1G80410 1337 / 0.0 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF07719 TPR_2 Tetratricopeptide repeat
CL0020 TPR PF12569 NARP1 NMDA receptor-regulated protein 1
Representative CDS sequence
>Potri.003G056700.3 pacid=42785905 polypeptide=Potri.003G056700.3.p locus=Potri.003G056700 ID=Potri.003G056700.3.v4.1 annot-version=v4.1
ATGGGAGCTTCTCTGCCTCCCAAAGAGGCTAACCTCTTCAAGCTCATCGTCAAATCATATGAAAGTAAACAGTACAAGAAGGGACTGAAGGCAGCAGATA
CTATCTTGAAGAAGTTTCCAGACCATGGAGAAACTTTATCCATGAAGGGTTTGACATTAAATTGCATGGATCGTAAATCTGAAGCATACGAACTGGTCCG
ACTTGGCCTAAAGAATGACCTTAAGAGTCATGTTTGCTGGCATGTTTATGGCCTCCTTTATCGATCTGACCGAGAGTATAGGGAGGCCATCAAATGCTAT
CGAAACGCATTGAGAATAGATCCAGACAATATTGAAATACTGAGGGACTTGTCACTCTTACAGGCTCAAATGCGGGACCTTACAGGTTTTGTTGAGACTA
GACAGAAACTTCTATCCCTGAAACCAAATCATCGCATGAACTGGATTGGCTTTGCTGTTGCCCACCATTTGAACTCAGATGGTTCAAAAGCAGTTGAAAT
TCTTGAAGCATATGAAGGGACACTTGATGATGATTATCCTCCAGATAATGAACGATGGGAGCATGGAGAAATGCTTTTGTATAAGATCTCTTTATTAGAG
GAATGTGGTTCTCTTGAGAGAGCTATCGAGGAGTTGCGTAAGAAAGAGTCAAAAATTGTTGATAAATTGACCTATAAAGAACAAGAGGTTTCTCTATTAG
TGAAGCTTGGTCGTCATGAAGAAGGTGCTGAATTGTACAAGGCATTGCTTTCTATTAATCCTGACAACTACAGATATTATGAAGGTCTACAAAAATGTGT
TGGGCTGCATGCGGAAAATGGCCTTTCTTCTTCTGATATTGATCAGTTGGATGCCTTGTACAAATCACTTGGGCAGCAGTACACTTGGTCATCAGCTGTT
AAGAGAATACCACTTGATTTTCTCCAAGGTGAAAAGTTTCATGAAGCTGTAGATAATTACATTAGACCCCTCCTGACCAAGGGAGTTCCTTCGTTATTCT
CAGATCTTTCACCACTATATGACCACCCTGGAAAGGCAGATATACTGGAGAAACTTATTCTCGAAGTGGAGCATTCTCTTAGGATAAGTGGGGGATACCC
TGGGAGGGCAGAAAAAGAGCCTCCTTCAACACTTATGTGGACCTTGTTTTTCTTGGCTCAGCATTACGACAGACGGGGACAGTATGATGTTGCTCTGAGT
AAAATTGACGAGGCTATAGAACACACTCCAACTGTGATTGATTTATATTCTGTCAAGAGTCGCATTTTGAAGCATGCTGGTGATTTGGCAGCTGCTGCCA
CTTTGGCAGATGAAGCTAGATGTATGGATCTTGCAGATCGATATATAAACAGTGAATGTGTCAAACGTATGCTACAGGCTGATCAGGTGGCTTCGGCTGA
AAAAACTGCTGTTTTGTTTACAAAAGATGGGGATCAGCACAACAACCTTCATGACATGCAGTGCATGTGGTATGAACTTGCTTCTGGTGAGAGTTACTTC
CGTCAAGGTGATCTTGGACGGGCTTTAAAGAAGTTTTTAGCGGTGGAGAAGCACTATGCAGATATTACTGAAGACCAATTCGACTTCCATTCCTATTGTT
TAAGGAAAATGACTCTACGAGCCTACGTGGCAATGCTTAAATTTCAAGATCGCTTGCATTCACATGCATATTTCCACAAAGCAGCGGCTGGAGCTATCAG
ATGTTACATAAAATTGTTTGATTCTCCTTCGAAGTCAATGGCTGAAGAAGAAGAAGAGATGTCAAAGTTGCCGCCTTCTCAGAGAAAGAAGATGAGGCAA
AAACAGAAAAAGGCAGAAGCCAGAGCTAAGAAAGAAGCCGAGGTGAGAAATGAAGAATCAAGTGCTAGTAGTGTTTCTAAGTCGGGTAAGCGGCATGTTA
AACCTGTAGATCCAGATCCAAATGGGGAAAAGTTGTTGCAGGTTGAAGATCCATTGTTGGAAGCTACAAAGTACTTGAAGCTGCTTCAGAAACATTCGCT
CAACTCTTTGGAGACACACTTGCTTTCTTTTGAAGTGAATATGAGAAAGAAGAAAATTCTGCTCGCTCTTCAGGCTGTAAAGCAATTGCTCAGGTTGGAT
GCTGAAAACCCTGATTCCCATCGCTGCTTGGTTAGATTCTTCCATAAAGTGGGTACAATGACTGCTCCTGTGACTGATACTGAGAAACTTGTTTGGAGTG
TCTTGGAAGCAGAGCGTCCATTCATTAGTCAATTGCATGAGAAAAATCTCACTGAAGCAAACAAGATTTTCTTTGAAAAACATAAAGGTTCTTTAATGCA
TAGAGCTGCAGTGGCGGAAATGATATTTGTTTTGGAACCTAACAAGAAACGTGAGGCTATCAAATTAATTGAAGATTCAACCAACAACCCTGCACCAATA
AATGGAGCACTTGGACCAGTTAAGGAATGGAAACTCAAAGACTGCATTGCAGTCCACAAGCTCCTAGGAGCAGTTCTTGATGATCCCGATGCTGCATTGA
GGTGGAAATTGCGTTGCGCTCAGTATTTCCCTTGCTCGGCATACTTTGAAGGAGAGCGCAGCTCTGCCATGCCCAACTCAGTGTACAGTCAGATAGCCAA
GAAACCTGCGAATGGAGACTCGAGCCATCCTGAAGGTGGTAATATTGCAGATTTTGTTTCACAAAATGGAAAGCTGGAGGCTTTCAAGGATCTTATCGTC
TGA
AA sequence
>Potri.003G056700.3 pacid=42785905 polypeptide=Potri.003G056700.3.p locus=Potri.003G056700 ID=Potri.003G056700.3.v4.1 annot-version=v4.1
MGASLPPKEANLFKLIVKSYESKQYKKGLKAADTILKKFPDHGETLSMKGLTLNCMDRKSEAYELVRLGLKNDLKSHVCWHVYGLLYRSDREYREAIKCY
RNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQKLLSLKPNHRMNWIGFAVAHHLNSDGSKAVEILEAYEGTLDDDYPPDNERWEHGEMLLYKISLLE
ECGSLERAIEELRKKESKIVDKLTYKEQEVSLLVKLGRHEEGAELYKALLSINPDNYRYYEGLQKCVGLHAENGLSSSDIDQLDALYKSLGQQYTWSSAV
KRIPLDFLQGEKFHEAVDNYIRPLLTKGVPSLFSDLSPLYDHPGKADILEKLILEVEHSLRISGGYPGRAEKEPPSTLMWTLFFLAQHYDRRGQYDVALS
KIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYINSECVKRMLQADQVASAEKTAVLFTKDGDQHNNLHDMQCMWYELASGESYF
RQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVAMLKFQDRLHSHAYFHKAAAGAIRCYIKLFDSPSKSMAEEEEEMSKLPPSQRKKMRQ
KQKKAEARAKKEAEVRNEESSASSVSKSGKRHVKPVDPDPNGEKLLQVEDPLLEATKYLKLLQKHSLNSLETHLLSFEVNMRKKKILLALQAVKQLLRLD
AENPDSHRCLVRFFHKVGTMTAPVTDTEKLVWSVLEAERPFISQLHEKNLTEANKIFFEKHKGSLMHRAAVAEMIFVLEPNKKREAIKLIEDSTNNPAPI
NGALGPVKEWKLKDCIAVHKLLGAVLDDPDAALRWKLRCAQYFPCSAYFEGERSSAMPNSVYSQIAKKPANGDSSHPEGGNIADFVSQNGKLEAFKDLIV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G80410 OMA, EMB2753 OMISHA, EMBRYO DEFECTIVE 2753,... Potri.003G056700
[exp]
0 1
AT5G64420 DNA polymerase V family (.1) Potri.009G079900
[exp]
4.24 0.7707
AT3G06530 ARM repeat superfamily protein... Potri.003G151500
[exp]
8.36 0.7688
AT2G34357 ARM repeat superfamily protein... Potri.006G137900
[exp]
9.16 0.7561
AT1G17690 NOF1 nucleolar factor 1, unknown pr... Potri.003G010000
[exp]
11.48 0.7519
AT1G74240 Mitochondrial substrate carrie... Potri.012G066000
[exp]
11.53 0.7474
AT2G05120 Nucleoporin, Nup133/Nup155-lik... Potri.002G221300
[exp]
11.83 0.7555
AT2G28450 C3HZnF zinc finger (CCCH-type) family... Potri.009G013000
[exp]
20.49 0.7407
AT4G10320 tRNA synthetase class I (I, L,... Potri.017G033200
[exp]
25.47 0.7371
AT1G26460 Tetratricopeptide repeat (TPR)... Potri.010G159100
[exp]
29.93 0.6956
AT5G01270 CPL2, ATCPL2 carboxyl-terminal domain (ctd)... Potri.016G114600
[exp]
32.64 0.6472

Potri.003G056700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.