Plant FIBer expression Database

Potri.003G057700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14746 84 / 8e-20 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G176800
[exp]
167 / 7e-52 AT4G14746 87 / 8e-21 unknown protein
Potri.013G039300
[exp]
86 / 6e-21 AT4G14746 115 / 9e-32 unknown protein
Potri.008G156800
[exp]
86 / 1e-20 AT4G14746 176 / 1e-55 unknown protein
Potri.005G051900
[exp]
82 / 2e-19 AT4G14746 120 / 1e-33 unknown protein
Potri.010G082500
[exp]
76 / 4e-17 AT4G14746 187 / 4e-60 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035902
[exp]
105 / 4e-28 AT4G14746 84 / 7e-20 unknown protein
Lus10025761
[exp]
97 / 2e-24 AT4G14746 79 / 6e-18 unknown protein
Lus10039368
[exp]
86 / 2e-20 AT4G14746 164 / 1e-50 unknown protein
PFAM info
Representative CDS sequence
>Potri.003G057700.3 pacid=42787071 polypeptide=Potri.003G057700.3.p locus=Potri.003G057700 ID=Potri.003G057700.3.v4.1 annot-version=v4.1
ATGAACACATTCAAATTGAACTTCACTCCATTTTCTTTCCATCTTCTTCTCTTCAGTCTCTTGGCATTGACAGTAAATGGCACATTACAAGATGATGTTT
GTGCAATGAAAAATTGTGGGGAAGGAGCGTGTAAGGCTTCTAATGCTTCAGTGCTTGGTTTTGACTGCGAGTGTTATTCTGGTTGGAAGAAGATACAGAT
TGGTCCTTTGACCTTCCCCTATTGTGGTCTTCCCAACTGCACTGTTGACTTTGGATGTGGCAATGGAGCTCCACCACCACCTCCACCTCCACCTCCACCT
CCACCGTTCGATCTCTTAAACCCCTGTAACCTTGTTTGGTGTGGTGATGGAACGTGCGTGGCTAATGGAACTGGACACATATGCCGATGCAACGAAGATT
CTGCAAATTTGTTTAACATGACAGGCTTTGCTTGTTTCAAAAAATGTTATTTGGGAGCAGATTGCAGTGATGTTGGATTAGGCAGGTCACCGCCTTCTCC
TGCTAGTTCGGCCACTTCAATACTTAATGGCTTGTTCGAGGCATCAAATCCCTTTAAGCATCTCTGTGCATTATCGACGATATTGTTAGCTCCAGCTTTC
CTAACATGGCTTTAG
AA sequence
>Potri.003G057700.3 pacid=42787071 polypeptide=Potri.003G057700.3.p locus=Potri.003G057700 ID=Potri.003G057700.3.v4.1 annot-version=v4.1
MNTFKLNFTPFSFHLLLFSLLALTVNGTLQDDVCAMKNCGEGACKASNASVLGFDCECYSGWKKIQIGPLTFPYCGLPNCTVDFGCGNGAPPPPPPPPPP
PPFDLLNPCNLVWCGDGTCVANGTGHICRCNEDSANLFNMTGFACFKKCYLGADCSDVGLGRSPPSPASSATSILNGLFEASNPFKHLCALSTILLAPAF
LTWL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G14746 unknown protein Potri.003G057700
[exp]
0 1
AT4G20990 ATACA4, ACA4 A. THALIANA ALPHA CARBONIC ANH... Potri.006G047500
[exp]
4.24 0.9922
AT2G42250 CYP712A1 "cytochrome P450, family 712, ... Potri.016G052600
[exp]
4.24 0.9966
AT1G08510 FATB fatty acyl-ACP thioesterases B... Potri.012G051400
[exp]
5.09 0.9853
AT3G08680 Leucine-rich repeat protein ki... Potri.003G138900
[exp]
5.29 0.9953
AT2G46150 Late embryogenesis abundant (L... Potri.011G025100
[exp]
6.00 0.9772
AT5G45890 SAG12 senescence-associated gene 12 ... Potri.007G075100
[exp]
6.48 0.9960
AT1G31930 XLG3 extra-large GTP-binding protei... Potri.013G157100
[exp]
8.36 0.9921
AT1G16250 Galactose oxidase/kelch repeat... Potri.004G037400
[exp]
8.36 0.9936
AT1G66350 GRAS RGL1 RGA-like 1 (.1) Potri.015G091200
[exp]
9.48 0.9953
Potri.001G151150
[exp]
11.83 0.9796

Potri.003G057700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.