Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80350 815 / 0 FTR, FRC2, FRA2, BOT1, ATKTN1, AAA1, LUE1, ERH3, MAD5 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G34560 283 / 6e-91 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G27600 264 / 1e-82 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT3G27120 263 / 4e-82 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G45500 251 / 3e-77 AAA-type ATPase family protein (.1.2) AT3G19740 228 / 6e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G02890 222 / 2e-62 AAA-type ATPase family protein (.1.2) AT4G28000 219 / 2e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02480 220 / 6e-62 AAA-type ATPase family protein (.1) AT1G50140 217 / 3e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G176900 [exp] 893 / 0 AT1G80350 809 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G085200 [exp] 292 / 5e-94 AT2G34560 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G065100 [exp] 286 / 1e-91 AT2G34560 600 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G144300 [exp] 274 / 1e-86 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022300 [exp] 270 / 5e-85 AT2G27600 703 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.010G237100 [exp] 269 / 8e-85 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.004G184500 [exp] 268 / 1e-84 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022216 [exp] 266 / 1e-83 AT2G27600 701 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.001G331200 [exp] 265 / 1e-80 AT3G27120 661 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023115 [exp] 817 / 0 AT1G80350 906 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011477 [exp] 814 / 0 AT1G80350 904 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038499 [exp] 289 / 2e-92 AT2G34560 579 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10023310 [exp] 283 / 5e-88 AT2G34560 551 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019537 [exp] 273 / 4e-86 AT2G27600 791 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10004891 [exp] 269 / 1e-84 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10043381 [exp] 258 / 5e-80 AT2G27600 778 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10020589 [exp] 257 / 2e-79 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10041563 [exp] 256 / 4e-77 AT3G27120 679 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038001 [exp] 241 / 1e-73 AT2G45500 679 / 0.0 AAA-type ATPase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05496 [poplar] [flax] RuvB_N Holliday junction DNA helicase RuvB P-loop domain
Representative CDS sequence Show only first row Show all	>Potri.003G057800.1 pacid=42786349 polypeptide=Potri.003G057800.1.p locus=Potri.003G057800 ID=Potri.003G057800.1.v4.1 annot-version=v4.1 ATGGTAGGGAGTGGGAGTTCACCAGCAACGGCGGCGCTAAGTGGCTTACAAGATCACTTGAAATTGGCAAGAGAATATGCTCTTGAAGGCCTCTATGACA CTTCCATTATCTTCTTCGATGGTGCCATTGCTCAGATCAACAAGCATCTAACGACGCTTGACGACCCTTTAATTCGTACAAAATGGATGAATCTGAAGAA ATCCCTTTCCGAGGAGACTGAAATTGTAAAACAATTGGATGCTGATAGAAGGGCTTTTAAGGAAGCTCCTGCTGCCAGGCGCGTTGCTTCTCCCCCCATT CATGCTAAATCCTCCTTTGTTTTCCAGCCATTAGATGAGTACCCTACTTCCTCTGCCGCTCCCATCGATGATCCTGATGTTTGGAGGCCGCCCAGTCGGG ACACTACCAGCAGGAGACCCACTAGAGCTTCCCAAGTAGGTTTAAGGAAGTCGCCACAAGATGGGGCCTGGGCTCGTGGTGCTTCCACTAGGACGGGTAC CACTGGACGTGGTGCCAAGACCGCTGCTTCAAGTAGGGTGAATTCGGGAGTCAGAGCGTCGACAACTGGAAAGAAAGGCACGGGCACTGGAAAATCTGGA AGAGGAGACTCAGCTAATGGTGATGCTGAAGATGGAAAGAGGAGGCCACAATATGAGGGACCAGATCCTGACTTGGCTGAGATGCTTGAAAGGGATGTCT TGGAAACTACTCCTGGTGTAAGATGGGATGATGTTGCAGGACTCAGTGAAGCAAAAAGACTTCTGGAGGAAGCTGTTGTCCTTCCTTTGTGGATGCCTGA ATATTTCCAGGGAATCAGGAGACCTTGGAAAGGCGTTCTTATGTTTGGCCCTCCTGGTACTGGGAAGACGCTACTTGCTAAAGCTGTTGCTACTGAGTGT GGTACAACATTTTTCAATGTTTCATCTGCTACATTAGCTTCAAAATGGCGTGGGGAGAGTGAACGGATGGTTCGGTGCTTGTTTGATCTAGCACGAGCTT ATGCACCAAGTACAATTTTCATTGATGAGATTGATTCTCTATGCAATGCTAGGGGGGCTTCAGGGGAACATGAATCATCTCGAAGGGTCAAATCTGAACT TCTGGTTCAGGTAGATGGTGTAAACAATAGTTCCACTGGCGAAGATGGCAGTCGGAAAATAGTGATGGTTTTAGCTGCTACTAACTTTCCTTGGGACATA GATGAAGCACTGAGGAGGAGGTTGGAAAAGCGTATATATATTCCACTTCCAAGTTTTGAGAGTCGTAAGGAGCTTATTAGGATCAATTTGAAAACTGTCG AGGTGTCCACTGATGTCAATATTGATGAGGTTGCTCGCAGGACAGATGGATACAGTGGAGATGATCTAACTAATGTTTGCAGAGATGCTTCTTTAAATGG GATGAGGCGAAAGATAGCGGGCAAGACACGAGATGAAATTAAGAACATGCCTAAGGACGAGATTTCAAACGATCCTGTTGCAATGTGTGATTTTGAAGAA GCCTTGCGGAAGGTTCAGCGCAGTGTTTCCCCATCAGATATCGAGAAGCATGAGAAGTGGTTCTCGGAATTTGGATCAGCCTGA
AA sequence Show only first row Show all	>Potri.003G057800.1 pacid=42786349 polypeptide=Potri.003G057800.1.p locus=Potri.003G057800 ID=Potri.003G057800.1.v4.1 annot-version=v4.1 MVGSGSSPATAALSGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLTTLDDPLIRTKWMNLKKSLSEETEIVKQLDADRRAFKEAPAARRVASPPI HAKSSFVFQPLDEYPTSSAAPIDDPDVWRPPSRDTTSRRPTRASQVGLRKSPQDGAWARGASTRTGTTGRGAKTAASSRVNSGVRASTTGKKGTGTGKSG RGDSANGDAEDGKRRPQYEGPDPDLAEMLERDVLETTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC GTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSTGEDGSRKIVMVLAATNFPWDI DEALRRRLEKRIYIPLPSFESRKELIRINLKTVEVSTDVNIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISNDPVAMCDFEE ALRKVQRSVSPSDIEKHEKWFSEFGSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Potri.003G057800 [exp]	0	1
AT4G02010			Protein kinase superfamily pro...		Potri.002G194700 [exp]	3.60	0.9138
AT1G80370		CYCA2;4	Cyclin A2;4 (.1)		Potri.003G058200 [exp]	5.29	0.9050
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.008G038450 [exp]	7.00	0.8943
AT2G46180		GC4	golgin candidate 4 (.1)		Potri.002G165500 [exp]	11.31	0.8484
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Potri.004G218500 [exp]	14.49	0.8893	MLO4.1
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Potri.002G057800 [exp]	17.49	0.8901	Pt-VCL1.3
AT3G48860			unknown protein		Potri.012G105400 [exp]	18.33	0.8403
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Potri.008G094200 [exp]	20.97	0.8856	Pt-HIUHASE.1
AT3G21770			Peroxidase superfamily protein...		Potri.014G135580 [exp]	24.24	0.8707
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.005G060800 [exp]	25.92	0.9023

Compare expression of checked genes

Potri.003G057800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.