Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15690 500 / 1e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32450 301 / 6e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G25580 288 / 3e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 261 / 1e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G14330 263 / 5e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 264 / 1e-77 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G23330 261 / 3e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 262 / 5e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02980 257 / 1e-76 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 256 / 5e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G116600 [exp] 366 / 3e-117 AT2G25580 452 / 3e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G038900 [exp] 317 / 1e-101 AT2G15690 280 / 1e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 289 / 8e-86 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 270 / 7e-80 AT3G22690 582 / 0.0 unknown protein Potri.002G027800 [exp] 269 / 1e-79 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G077700 [exp] 264 / 3e-79 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G053500 [exp] 263 / 1e-78 AT5G52630 785 / 0.0 mitochondrial RNAediting factor 1 (.1) Potri.010G168800 [exp] 263 / 1e-78 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G086900 [exp] 263 / 3e-78 AT4G14850 964 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019864 [exp] 592 / 0 AT2G15690 477 / 3e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014049 [exp] 588 / 0 AT2G15690 478 / 2e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008570 [exp] 421 / 5e-141 AT2G15690 375 / 9e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032688 [exp] 416 / 4e-139 AT2G15690 375 / 2e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041867 [exp] 342 / 6e-108 AT2G25580 447 / 2e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028413 [exp] 337 / 4e-106 AT2G25580 447 / 8e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040577 [exp] 263 / 3e-81 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006123 [exp] 268 / 6e-80 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000706 [exp] 270 / 1e-79 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10013991 [exp] 271 / 5e-79 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.003G058300.1 pacid=42787413 polypeptide=Potri.003G058300.1.p locus=Potri.003G058300 ID=Potri.003G058300.1.v4.1 annot-version=v4.1 ATGGCGTCTTCCATGGCAATCCGTCTTTCACAGCCTCCACAAAAGCTTCATCCACTCTTCTCCAAGGTACGCTCTCTTCGACACTTTTCTTTCAGTAACA AAACCCTAATCCTCGCTAAACCCCTCACTACTTCAGCATTACCAAATGACCATCAAAGATTTTATCCCAATGATGCTTCCCAATGGAACTCGAGAACCCT GACACACCCTCCTTCTCCTCCTCCTCCTCATCACCAGTCCTCCCCACAACCTGCTCACTACAATCACAATCAACCCATCCAAAATCAGCAATACCCTCCT CCAAACCAACAAAATTATCCTAATCAGGGTTATGCCTATCCTGACCAAGGAGGATATCCTCAACAACAACACCAGTATCCAAACCCTAATCAACGGGATC AAAATTATCCCCAGTACCAAAACCCTGGTCAGTTTAGCCCTGATGTCCGCGGGGATTATGGGCAACCCGGAAGCCCAAATCGATGGGACAACCGAAATCA GGGATACCCGCAACAGAAAAAAACTGATCAGTGGGCCTCACGTGTGGTTCCGGAGAGTCGAAGACAGGATTTGAATGTTAATTTTAGTGCCAGTGCTAAT GCTAATGCTCCAGCTACTGCTCCCCAGTATCCAAACCCTAATCAACGGTATCAAAATTACCCCCAGTATCCAAACCCTAATCAACGGGATCAAAATCATC CCCAGTACCAAAACCCTGGTCAGTTTAGCCCTGATGTCCGGGGGGATTATGGGCAACCCGGAAGCCCAAATCGATTGGACAACCGAAATCAGGGATATCC GCAACAGAGAAACACTGATCAGTGGGCCTCACGTGTGGGCTCGGAGAGTCGAAGACAGGATTTGAATGTTAATTTTAGTGCCAATGCTAATGATCCAGCT CCAGCTACTGCTCCGCCTCCTTCGGTTTATGACTTGGAGCGTTTGTGTCAGGAGGGTAAGGTTAAGCAAGCTATCGAGTTGATGGATAATGGGGTTAAAG GCGATGCTAATTGTTTTTATAGTTTGTTTGAGATGTGCTCAAAACATGAGGATGCCAAGAAGGTCCATGATTATTTTTTGCAGTCGACCTTTAGGGGCGA TGTTAAGTTGAACAATAATGTGATTAAGATGTATGGGAAATGTGGAAGTATGGCAGATGCGAGGAGAGTTTTTGATCATATGCCTGAGAGGAATATGGAT TCATGGCATTTGATGATAAATGAGTATGCCAATAATGACCTGGGAGATGAGGGGTTGGAGCTGTTTGAGCAGATGAAGAAGTTGGGCTTGGAACCCACTG GGGAAACATTTCATGCTGTTTTGTCTGCCTGTGCAAGTGCCGAGGCAGTGGAGGAAGGGTTTTTATATTTTGAGGAAATGAGCAGGGAGTTTGGCATAAG TCCAACCCTTGAGCATTATTTGAGCATTATAGATGTTCTTGGAAAGTCTGCATATCTTAATGAAGCTGTGGAGTATATTGAGAAACTTCCATTTGAACCC ACAGTGGAAATTTGGGAGGCATTGAGGAAGTATGCTAGAAGTCATGGAGACATTGATCTTGAAGACCACGCTGAGGAATTGATCGTTTCTCTTGATTCAT CAAAGGCTGTTGCTAATAAAATCCCAACTCCACCACCGAAGAAGTATAATCTGATTAGCATGCTTGAAGGAAAGAATAGAGTAGCTGAGTTTAGGAATCC TACATTTTACAAGGATGATGAGAAATTAAAGGAATTGCGTGAGATGAAAACAGGTGGCTATGTTCCTGATACTAGATATGTTCTTCATGACATTGATCAG GAGGCCAAAGAGCAAGCCTTGCTGTATCACAGTGAGCGGTTGGCAATTGCATATGGTCTTATTAGCACCCCAGCAAGGATGCCCTTGAGGATAATCAAGA ATCTCCGTGTGTGTGGGGACTGTCACAATGCCATCAAGATCATGTCAAAGATTGTTGGGAGGGAGTTAATAGTTAGGGACAACAAAAGGTTTCATCATTT CAAGGATGGCAAGTGTTCTTGTGGAGATTATTGGTGA
AA sequence Show only first row Show all	>Potri.003G058300.1 pacid=42787413 polypeptide=Potri.003G058300.1.p locus=Potri.003G058300 ID=Potri.003G058300.1.v4.1 annot-version=v4.1 MASSMAIRLSQPPQKLHPLFSKVRSLRHFSFSNKTLILAKPLTTSALPNDHQRFYPNDASQWNSRTLTHPPSPPPPHHQSSPQPAHYNHNQPIQNQQYPP PNQQNYPNQGYAYPDQGGYPQQQHQYPNPNQRDQNYPQYQNPGQFSPDVRGDYGQPGSPNRWDNRNQGYPQQKKTDQWASRVVPESRRQDLNVNFSASAN ANAPATAPQYPNPNQRYQNYPQYPNPNQRDQNHPQYQNPGQFSPDVRGDYGQPGSPNRLDNRNQGYPQQRNTDQWASRVGSESRRQDLNVNFSANANDPA PATAPPPSVYDLERLCQEGKVKQAIELMDNGVKGDANCFYSLFEMCSKHEDAKKVHDYFLQSTFRGDVKLNNNVIKMYGKCGSMADARRVFDHMPERNMD SWHLMINEYANNDLGDEGLELFEQMKKLGLEPTGETFHAVLSACASAEAVEEGFLYFEEMSREFGISPTLEHYLSIIDVLGKSAYLNEAVEYIEKLPFEP TVEIWEALRKYARSHGDIDLEDHAEELIVSLDSSKAVANKIPTPPPKKYNLISMLEGKNRVAEFRNPTFYKDDEKLKELREMKTGGYVPDTRYVLHDIDQ EAKEQALLYHSERLAIAYGLISTPARMPLRIIKNLRVCGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15690			Tetratricopeptide repeat (TPR)...		Potri.003G058300 [exp]	0	1
AT3G06200			P-loop containing nucleoside t...		Potri.010G029400 [exp]	1.41	0.9645
AT3G06200			P-loop containing nucleoside t...		Potri.008G200600 [exp]	2.00	0.9596
AT1G31220			Formyl transferase (.1)		Potri.012G107500 [exp]	2.82	0.9449
					Potri.017G120301 [exp]	4.47	0.9464
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Potri.017G129800 [exp]	4.47	0.9465
AT1G06440			Ubiquitin carboxyl-terminal hy...		Potri.002G245100 [exp]	4.58	0.9449
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Potri.004G186500 [exp]	6.92	0.9336
AT4G24320			Ubiquitin carboxyl-terminal hy...		Potri.004G223200 [exp]	7.54	0.9151
AT2G45680	TCP	TCP9	TCP family transcription facto...		Potri.001G111800 [exp]	8.48	0.9397
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.017G087000 [exp]	8.94	0.9250

Compare expression of checked genes

Potri.003G058300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.