Plant FIBer expression Database

Potri.003G058500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80380 600 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G177300
[exp]
694 / 0 AT1G80380 573 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018910
[exp]
514 / 0 AT1G80380 469 / 6e-168 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
Lus10028609
[exp]
216 / 5e-67 AT1G80380 189 / 5e-58 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Potri.003G058500.8 pacid=42785591 polypeptide=Potri.003G058500.8.p locus=Potri.003G058500 ID=Potri.003G058500.8.v4.1 annot-version=v4.1
ATGGCGGCTTTCAATATTCCACCACCGTCCACCACCACAACCACCTTCTCGTCTCTTCCTTCTTCTTACTGTCACTCCAATATTATTAGAACTAATTATT
TCAACAATGATTACAATAATAATAAAAAGTTCTCTCGTGGTTTTCACTTCTCTCTATTCTCTTCCCAGACTAATCCATCATCATCATCATCTTCTAAGAC
TAAGAGAGAACTCTCTAAAATGCCTACCCATTTCTCTAAATCAGGCAGTGAACATTCGTGGATTCAAGACGGCTCCATGAATCGGAACTCCACTTCCAGC
AACAAAGGGATGCAAGGTCCATTGCATTCGGTGTTTCCCTCAACACCTGCACTAGTCTCTTCCGTGGAGGACCTTTTCGAATTTATTTGCTCAGGCCCTC
TTATAAGCAAGTTGGGTTTGACCTCCGAAATGATTGCTGAGTCAATAGACAAATGGATATCATATGGCTTGCAGTTGTGCCGATTATTTCAGCTTAATGA
ATTATATCTTACAGTTCCTCAGAAAGCAAGGTTTTATCACTATTATATACCGGTCTTCGTTTGGTGTGAAGATAAGATTTCTAAGCACGTAACCCAGTTC
AAAGACTCTGAAGATATACCTCCTTTAGTGATTGGTTTTAGTGCTCCACAAGGTTGTGGAAAGACCACACTTGTCTTTGCTCTTGATTATCTCTTCAAAG
TAACTGGCAGGAAGTCCGCAATGTTATCCATAGATGATTTCTATTTAACAGCAGAGGGTCAGGCCAAACTGAGAGAAGCCAGTCCAGGAAATGCACTTCT
AGAGTTCCGAGGAAATGCTGGGAGTCATGATCTTCCATTCTCTATTGAAACTCTGTCTGCTCTAAACAAACTGACAAAAGAAGGCATGAAGATGAGGCTG
CCTCGATATGATAAGTCTGCATACAGTGGAAGAGGTGACAGAGCTGATCCTTCAACATGGCCAGAGGTTGAAGGACCATTAACAGTTGTGCTATTTGAAG
GTTGGATGCTTGGTTTTAAACCACTTCCAGTGGAAGTCGTCCAAGCAGTTGATCCTCAGCTACAGATCATAAATAAGAATCTTGAAGCCTATTATGATGC
GTGGGACAAGTTTATTAAGGCATGGGTGGTCATCAAGATTCAGGACCCTAGTTGTGTCTACCAATGGCGTTTGCAGGCAGAGATTGCCATGAGGGAGGAT
GGAAACCCTGGGATGACTGATGAGGAGGTTAAAGATTTTGTTTCGCGTTACCTACCAGCATACAAGGCTTACCTTCCCACCCTCTATGCTGAAGGACCCA
ATGGTTCAGATCCGGAGAATCTCCTTGTCATTGAAATTGATGAAGGAAGAAATCCTATCCTAGGTAATTAG
AA sequence
>Potri.003G058500.8 pacid=42785591 polypeptide=Potri.003G058500.8.p locus=Potri.003G058500 ID=Potri.003G058500.8.v4.1 annot-version=v4.1
MAAFNIPPPSTTTTTFSSLPSSYCHSNIIRTNYFNNDYNNNKKFSRGFHFSLFSSQTNPSSSSSSKTKRELSKMPTHFSKSGSEHSWIQDGSMNRNSTSS
NKGMQGPLHSVFPSTPALVSSVEDLFEFICSGPLISKLGLTSEMIAESIDKWISYGLQLCRLFQLNELYLTVPQKARFYHYYIPVFVWCEDKISKHVTQF
KDSEDIPPLVIGFSAPQGCGKTTLVFALDYLFKVTGRKSAMLSIDDFYLTAEGQAKLREASPGNALLEFRGNAGSHDLPFSIETLSALNKLTKEGMKMRL
PRYDKSAYSGRGDRADPSTWPEVEGPLTVVLFEGWMLGFKPLPVEVVQAVDPQLQIINKNLEAYYDAWDKFIKAWVVIKIQDPSCVYQWRLQAEIAMRED
GNPGMTDEEVKDFVSRYLPAYKAYLPTLYAEGPNGSDPENLLVIEIDEGRNPILGN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G80380 P-loop containing nucleoside t... Potri.003G058500
[exp]
0 1
AT3G63140 CSP41A chloroplast stem-loop binding ... Potri.002G053000
[exp]
2.23 0.9788
AT5G35630 ATGSL1, GLN2, G... GLUTAMINE SYNTHETASE LIKE 1, g... Potri.008G200100
[exp]
4.24 0.9704 Pt-NCPGS.8
AT2G21960 unknown protein Potri.005G084400
[exp]
4.47 0.9769
AT5G45930 CHLI-2, CHLI2 magnesium chelatase i2 (.1) Potri.004G053400
[exp]
6.00 0.9779 Pt-CHLI1.1
AT3G18000 XPL1, NMT1, XIP... XIPOTL 1, N-METHYLTRANSFERASE ... Potri.019G089700
[exp]
6.24 0.9684
AT4G12800 PSAL photosystem I subunit l (.1) Potri.014G175600
[exp]
6.92 0.9783 PSAL.2
AT2G20890 PSB29, THF1 THYLAKOID FORMATION1, photosys... Potri.019G117900
[exp]
8.00 0.9712
AT1G09340 CSP41B, CRB, HI... heteroglycan-interacting prote... Potri.005G010266
[exp]
8.24 0.9664
AT1G64150 Uncharacterized protein family... Potri.003G134300
[exp]
8.77 0.9698
AT1G72640 NAD(P)-binding Rossmann-fold s... Potri.003G063800
[exp]
9.79 0.9678

Potri.003G058500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.