Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15510 1113 / 0 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 537 / 2e-178 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 523 / 9e-174 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 517 / 3e-171 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 519 / 5e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 511 / 5e-168 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 494 / 4e-164 MEF22 mitochondrial editing factor 22 (.1) AT4G13650 501 / 5e-162 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 484 / 3e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G35130 477 / 6e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059400 [exp] 591 / 0 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 548 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 540 / 5e-180 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 519 / 3e-170 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G178200 [exp] 506 / 3e-167 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 504 / 2e-166 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.015G018700 [exp] 504 / 9e-166 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 509 / 3e-165 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 494 / 1e-162 AT3G22690 582 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026460 [exp] 1171 / 0 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025009 [exp] 1122 / 0 AT1G15510 1020 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 558 / 0 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 533 / 2e-177 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 517 / 3e-170 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019735 [exp] 506 / 5e-167 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 508 / 3e-166 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 507 / 7e-166 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 502 / 8e-166 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018978 [exp] 494 / 2e-159 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.003G058700.1 pacid=42785762 polypeptide=Potri.003G058700.1.p locus=Potri.003G058700 ID=Potri.003G058700.1.v4.1 annot-version=v4.1 ATGGCTCTCTCTGCTAAAACCCCACGATTTCCTCTCCACCAACACCTTCAAAACCTTAACTCACACTTCCCCGGAACCCACAACTCCAACAAAACTTTTA CCCTCTCTTTCAAACCCCAAAAGCCACACCTTTTCTCTTCTACACTAAACCGCCCTCAAAACTCACTCAACACCACAGCCACTACTTCAATTACCCCTCA AAACCCAACAAACTCACGCTTGCTTCAACTATGTCTTAGCGGGAACCTTGAACAAGCTCTGAAACACCTTGCTTCAATGCAAGAAGTTAAAATTCCCGTA GAAGAGGACTGCTTTGTTGCTTTGATAAGGTTATGTGAGAATAAGAGAGGATACAGTGAGGGTGAGTATGTGTGGAAAGCTGTGTTGAGTTCATTGGTGA CCCTGTTGAGTGTTAGGCTTGGAAATGCGTTGTTGAGTATGTTTGTGAGGTTTGGTGATGTGGGTAATGCTTGGAATGTCTTTGGGAGGATGGGAGAGAG AGATTTGTTTTCATGGAATGTTTTGGTTGGTGGGTATACAAAAGCAGGGTTTTTTGATGAGGCTTTGTGTTTGTATCATAGGATCTTGTGGGCTGGAATT AGGCCTGATGTCTATACTTTCCCTTCTGTTTTGAGGAGTTGTGCTGGGGCAATGGATTTAGTGAGAGGGAGAGAGGTTCATGCTCATGTGGTTAGATTTG ATTTTGACATGGATGTTGATGTTGTCAATGCTTTGATTACTATGTATGTAAAATGCGGGGATGTTGTTTCAGCGCGGATGTTGTTTGACAAAATGCCCAC TAGGGATAGGATTTCTTGGAATGCAATGATTTCAGGGTATTTTGAGAACGATGAGTGTTTGGAAGGGTTGGAATTGTTTTTCAGGATGCGTGAGCTTTCA ATTGATCCTGATTTGATGACCATGACGAGCGTGATATCTGCCTGTGAGCTTCTTGGCGATGAAAGATTAGGGACACAACTTCACAGTTATGTCGTGAGAA CAGCCTATGATGGTAATATTTCAGTGTATAACTCTTTGATTCAAATGTACTTGAGTGTTGGGCATTGGAAAGAAGCAGAAAGCGTTTTTTCAGGAATGGA ATGCAGAGATGTCGTGTCATGGACAACAATAATTTCTGGTTGTGTGGATAATTTGCTACCTGACAAGGCCTTGGAGACTTATAAAACCATGGAGATAACG GGCACCATGCCTGATGAGGTAACAATAGCCAGTGTTTTATCTGCTTGTGCTTCATTAGGGCAATTAGATATGGGCATGAAGCTTCATGAGCTTGCTGAGA GGACTGGGCACATATTGTATGTAGTTGTTGCGAACTCACTCATCGATATGTATTCAAAGTGCAAACGCATTGAAAAGGCTTTGGAAATCTTCCATCAAAT TCCTGACAAGGATGTGATATCCTGGACTTCAGTAATTAATGGGCTTCGGATTAACAATCGGTGTTTTGAGGCTTTGATATTCTTTCGGAAAATGATATTG AAGTCAAAACCAAATTCTGTAACATTGATTTCTGCCCTCTCTGCATGTGCTAGAGTAGGAGCTTTGATGTGCGGAAAAGAGATTCATGCCCATGCATTAA AGGCTGGAATGGGTTTCGATGGATTTCTACCCAATGCAATTTTGGACTTGTATGTCAGATGTGGAAGGATGAGAACTGCATTAAACCAGTTTAACTTGAA TGAAAAAGATGTCGGGGCTTGGAATATTTTGCTCACAGGATATGCTCAGAAAGGGAAAGGGGCTATGGTCATGGAGTTATTCAAAAGGATGGTGGAATCT GAAATAAATCCTGATGATGTTACATTCATTTCTCTACTATGTGCTTGCAGTAGATCTGGAATGGTAACTGAAGGTTTGGAGTACTTCCAGAGAATGAAAG TCAATTATCATATCACCCCGAATTTGAAACACTATGCCTGTGTGGTTGATTTACTTGGCCGTGCAGGGAAATTGAACGAAGCTCATGAATTTATAGAGAG AATGCCTATAAAGCCAGACCCAGCAATTTGGGGAGCCTTATTAAATGCCTGTAGGATCCACCGGCATGTTCTGCTAGGGGAGCTTGCTGCTCAGCACATT TTCAAGCAGGATGCTGAAAGTATTGGGTATTATATTCTCTTGTGTAATCTCTATGCTGACAGTGGTAAATGGGATGAAGTTGCAAAAGTTAGAAGGACAA TGAAAGAGGAAGGGCTAATCGTTGATCCTGGGTGTAGTTGGGTGGAAGTAAAGGGAAAAGTTCACGCTTTCCTTAGTGGTGATAATTTCCACCCTCAAAT GCAGGAAATAAATGTTGTTTTGGAGGGATTTTATGAGAAAATGAAGACATCTGGTTTCAATGGTCAAGAATGCAGTTCAATGGATGGAATTCAAACTTCA AAAGCTGACATATTTTGTGGGCACAGTGAGAGACAGGCCATTGCTTACAGCCTAATCAACTCTGCTCCTGGGATGCCTATATGGGTAACAAAGAATCTAT ATATGTGCCAAAGCTGTCATAGTACTGTCAAATTCATCTCCAAGATAGTTCGCAGAGAGATTTCTGTTAGGGATACTGAGCAGTTTCATCATTTCAAGGA TGGTTTGTGCTCTTGTGGCGATGAAGGTTACAGGTAA
AA sequence Show only first row Show all	>Potri.003G058700.1 pacid=42785762 polypeptide=Potri.003G058700.1.p locus=Potri.003G058700 ID=Potri.003G058700.1.v4.1 annot-version=v4.1 MALSAKTPRFPLHQHLQNLNSHFPGTHNSNKTFTLSFKPQKPHLFSSTLNRPQNSLNTTATTSITPQNPTNSRLLQLCLSGNLEQALKHLASMQEVKIPV EEDCFVALIRLCENKRGYSEGEYVWKAVLSSLVTLLSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGI RPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELS IDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEIT GTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMIL KSKPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQFNLNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVES EINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHI FKQDAESIGYYILLCNLYADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKGKVHAFLSGDNFHPQMQEINVVLEGFYEKMKTSGFNGQECSSMDGIQTS KADIFCGHSERQAIAYSLINSAPGMPIWVTKNLYMCQSCHSTVKFISKIVRREISVRDTEQFHHFKDGLCSCGDEGYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Potri.003G058700 [exp]	0	1
AT5G37570			Pentatricopeptide repeat (PPR-...		Potri.006G207500 [exp]	2.44	0.9645
AT5G39980			Tetratricopeptide repeat (TPR)...		Potri.017G075700 [exp]	2.64	0.9701
AT3G14900		EMB3120	EMBRYO DEFECTIVE 3120, unknown...		Potri.001G390600 [exp]	5.47	0.9498
AT2G13600			Pentatricopeptide repeat (PPR)...		Potri.012G018800 [exp]	6.00	0.9515
AT3G22150			Tetratricopeptide repeat (TPR)...		Potri.006G007800 [exp]	6.92	0.9545
AT1G63680		APG13, ATMURE, ...	PIGMENT DEFECTIVE EMBRYO 316, ...		Potri.001G103300 [exp]	7.14	0.9573	Pt-PDE316.1
AT3G29290		EMB2076	embryo defective 2076, Pentatr...		Potri.017G090500 [exp]	7.21	0.9189
AT2G40720			Tetratricopeptide repeat (TPR)...		Potri.001G258500 [exp]	7.41	0.9494
AT3G15000			cobalt ion binding (.1)		Potri.011G112200 [exp]	7.48	0.9457
AT1G59720		CRR28	CHLORORESPIRATORY REDUCTION28,...		Potri.018G092400 [exp]	7.48	0.9532

Compare expression of checked genes

Potri.003G058700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.