Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15570 499 / 1e-175 Phototropic-responsive NPH3 family protein (.1) AT1G52770 486 / 1e-170 Phototropic-responsive NPH3 family protein (.1) AT5G64330 248 / 2e-74 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT5G48800 216 / 1e-63 Phototropic-responsive NPH3 family protein (.1) AT1G30440 213 / 2e-62 Phototropic-responsive NPH3 family protein (.1) AT5G03250 208 / 8e-61 Phototropic-responsive NPH3 family protein (.1) AT5G13600 191 / 2e-54 Phototropic-responsive NPH3 family protein (.1) AT5G66560 191 / 3e-54 Phototropic-responsive NPH3 family protein (.1) AT2G47860 188 / 6e-54 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT2G30520 188 / 8e-54 RPT2 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G175400 [exp] 693 / 0 AT1G52770 507 / 8e-179 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 264 / 2e-81 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.007G112600 [exp] 256 / 3e-78 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.002G242300 [exp] 234 / 2e-70 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 228 / 3e-68 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 226 / 2e-67 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.008G038600 [exp] 224 / 1e-66 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G075400 [exp] 217 / 9e-64 AT5G10250 695 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 215 / 2e-63 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037848 [exp] 337 / 6e-113 AT3G15570 343 / 1e-115 Phototropic-responsive NPH3 family protein (.1) Lus10030390 [exp] 227 / 3e-70 AT3G15570 241 / 2e-75 Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 226 / 2e-67 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 217 / 1e-63 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 214 / 2e-62 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10014337 [exp] 207 / 3e-60 AT5G10250 620 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10023523 [exp] 205 / 3e-59 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 204 / 5e-59 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 203 / 1e-58 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 202 / 1e-58 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.003G058800.1 pacid=42787206 polypeptide=Potri.003G058800.1.p locus=Potri.003G058800 ID=Potri.003G058800.1.v4.1 annot-version=v4.1 ATGCTTGACTACTCTTCCACCAAAATGAAGAAGGCCTCTTTCCCAGAATTTGTCCTTTTCTCAGGATCAAAGACATCCCATTTAGCCGCCGAACGCTGGT TCGACGATGCATGCATCCTTGATATGGACTATTTTGTTAAGACCCTAGCCGGAATTAAGGCTAAGGGTGTCCGTCCAGACCTTATTGGTTCAATCATAGC TCATTATGCATCAAAGTGGCTACCAGACCTCTCTGATGGTCACCATCCTAGTACAGACAAGGGAATTGCAAACTTTGCAGAATCCCCAGAGAGTGTCACA ACTTCGTGGATGAAAAAGAGATTTTTCGTCGAAACCCTGGTAGGAATCCTGCCTCCGGAGAAGGATTCCATCCCATGTAACTTCCTCTTACGCCTTCTCC GGATTGCAAACATGGTCGGTGTGGAGCCTACATATAGAGCTGAGCTTGAAAAGATGATTTCATGGCAACTTGACCAAGCTTCACTGAAAGAGCTAATGAT ACCGTCGTTCAGTCACACTTGCGGGACATTGCTAGACGTCGAGCTAATAATTCGTCTAGTGGGGAGGTTTGTTAATTTAGATGAGGTTGCTAAAAGTGAT GCTGCCTTAATTAAGGTAGCTAAGCTTGTTGATTCTTACTTAGCAGAAGCTGCTGTGGATTCTAATTTGAATTTAGCCGAGTTTGTTGCTCTTGCTGGTG CTCTCCCAAGTCATTCCCGCGCCACAGATGATGGTTTATACCGTGCCATTGATACTTATCTTAAAGCACATCCTGGAGTGTCAAAGCATGAAAGAAAGGT TCTTTTTAGATTAATTGATAGCCGGAAACTCTCCCAGGAAGCATCACTCCATGCTGCCCAGAATGAACGATTGCCCGTTCGTGCTGTGATCCAAGTCCTC TTCTCCGAGCATACCAAACTTAATCGACAAATGGATTGGAGCGGGTCATTTAGTGGAACTAGAAGCCCCTACATAGGGCTTGAGGCCCCGGCTAGGTGCC TTTCGAAACGTGAAATGAGCGTGCAACAAACAGAGGTAAGGAAGCTCAGAGAAGATGTGCATAGGCTACAAAGCCAATGCTATGCCATGCAAGCGCAAAT GGAAAGGTCGTGGGAGAAAAAGAAAGGGTTTTTCAGGTGGAAGAAGCTTGGGAATGTCATGCCTTCAATGAAAAGTAATAATTTTAGTGTTGTTGAAAAG ATTGAAGAGAGTAATGAAGGAGAAGGAGAGGTGGGTTGTGGGATACAAACTCCCGTGGACTTGAAGACAAAGCTAGTGAGAGGCAAAAATAAAGCTCCTC TCATGTGGAGAAAATCAACTTCTTGA
AA sequence Show only first row Show all	>Potri.003G058800.1 pacid=42787206 polypeptide=Potri.003G058800.1.p locus=Potri.003G058800 ID=Potri.003G058800.1.v4.1 annot-version=v4.1 MLDYSSTKMKKASFPEFVLFSGSKTSHLAAERWFDDACILDMDYFVKTLAGIKAKGVRPDLIGSIIAHYASKWLPDLSDGHHPSTDKGIANFAESPESVT TSWMKKRFFVETLVGILPPEKDSIPCNFLLRLLRIANMVGVEPTYRAELEKMISWQLDQASLKELMIPSFSHTCGTLLDVELIIRLVGRFVNLDEVAKSD AALIKVAKLVDSYLAEAAVDSNLNLAEFVALAGALPSHSRATDDGLYRAIDTYLKAHPGVSKHERKVLFRLIDSRKLSQEASLHAAQNERLPVRAVIQVL FSEHTKLNRQMDWSGSFSGTRSPYIGLEAPARCLSKREMSVQQTEVRKLREDVHRLQSQCYAMQAQMERSWEKKKGFFRWKKLGNVMPSMKSNNFSVVEK IEESNEGEGEVGCGIQTPVDLKTKLVRGKNKAPLMWRKSTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15570			Phototropic-responsive NPH3 fa...		Potri.003G058800 [exp]	0	1
AT5G50690		ATHSD7	hydroxysteroid dehydrogenase 7...		Potri.016G048900 [exp]	1.41	0.9848
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Potri.006G067800 [exp]	2.44	0.9818
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Potri.018G129800 [exp]	2.82	0.9811
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Potri.014G152600 [exp]	6.32	0.9733
					Potri.009G008300 [exp]	6.32	0.9781
AT4G27360			Dynein light chain type 1 fami...		Potri.001G407900 [exp]	7.54	0.9629
AT1G52827		ATCDT1	cadmium tolerance 1 (.1)		Potri.001G177333 [exp]	7.74	0.9719
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Potri.002G007100 [exp]	8.36	0.9726
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.008G165400 [exp]	8.48	0.9642
AT1G69320		CLE10	CLAVATA3/ESR-RELATED 10 (.1)		Potri.010G160600 [exp]	9.48	0.9728	CLE9.1

Compare expression of checked genes

Potri.003G058800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.