Plant FIBer expression Database

AATP1.2 (Potri.003G058900) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol AATP1.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80300 944 / 0 ATNTT1 nucleotide transporter 1 (.1)
AT1G15500 908 / 0 ATNTT2 TLC ATP/ADP transporter (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G175200
[exp]
1104 / 0 AT1G80300 884 / 0.0 nucleotide transporter 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035908
[exp]
956 / 0 AT1G80300 927 / 0.0 nucleotide transporter 1 (.1)
Lus10025755
[exp]
955 / 0 AT1G80300 923 / 0.0 nucleotide transporter 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0015 MFS PF03219 TLC TLC ATP/ADP transporter
Representative CDS sequence
>Potri.003G058900.1 pacid=42786126 polypeptide=Potri.003G058900.1.p locus=Potri.003G058900 ID=Potri.003G058900.1.v4.1 annot-version=v4.1
ATGGAAGCGGTGTTACAAACCAGAGGGCTTCTTTCACTACCACCAAACCCCAAAGGCAGAGTTTTGTATCCTTCACAGGGCTTAAAGCAGAGGCTTTTTG
CTACAAAACCTAAAACCTTTTCTGGGTTTTCTTTGTCTTCAAATGGGGTTCCAAAATTTCCTACCTCTGTATCAAAACCAAATGGTTTCTTCCCAAAAGA
TAGAAACTTGCATATTTGCAGGGCTGAGGCTGCAGCTGCAGCTGATGGACAGCCTTTGTTTGGTGAAGAAACTGATAAACCAAAGTTTTTGGGTATTGAG
CTTGCGACTTTCAAAAAAATTATCCCACTTGGGTTAATGTTCTTTTGTATTCTTTTTAACTACACAATCCTTAGAGACACTAAGGACGTGTTGGTTGTGA
CGGCCAAAGGTAGCAGTGCAGAAATCATACCATTTTTGAAAACTTGGGTGAATTTGCCTATGGCTATTGGGTTCATGTTATTGTATACAAAATTGGCTAA
TGTCTTGTCTAAGCAGGCTCTCTTTTATACTGTAATTCTTCCTTTTATTGCCTTTTTTGGGGCTTTTGGGTTTGTTTTGTATCCACTCAGTAGTTATATC
CACCCAGAAGCATTTGCTGATAAACTTCTCAATGTACTTGGCCCAAGGTTTCTTGGTCCTCTTGCAATTATGAGGATTTGGACTTTTTGTTTGTTCTATG
TCATGGCTGAATTGTGGGGGAGTGTGGTGGTATCAGTGCTGTTCTGGGGATTTGCTAATCAGATCACTACTGTAGATGAAGCAAAACGGTTTTACCCTCT
TTTTGGACTCGGGGCGAATGTTGCTCTGATTTTCTCAGGCCGAACAGTGAAGTACTTTTCAAATTTGAGGAAAAACTTGGGTCCTGGTGTTGATGGCTGG
GCCGTCTCCCTCAAAGGAATGATGAGCATTGTGGTGCTGATGGGGCTTGCAATATGTTTGTGTTACTGGTGGGTGAATACTTTTGTTCCTCTACCAACCC
GCAGTTTGAAGAAGAAGGAAAAGCCGAAGATGAGCACAATGGAGAGCTTGAAGTTCCTTGTGTCTTCTAGATATATTAGAGATCTTGCAACTTTGGTGGT
TGCATATGGTATTAGCATCAACCTTGTTGAGGTTACCTGGAAATCAAAGCTAAAGGCGCAGTTTCCCAGCCCGAATGAGTACTCTGCCTTTATGGGTGAC
TTTTCAACAGCAACGGGAATAGCAACTTTCTCGATGATGCTTCTAAGTCAATTTATATTTGACAAATATGGATGGGGAGTTGCAGCCAAAATCACACCCA
CAGTCCTGCTTCTAACAGGAGTCGGTTTCTTCTCTCTGATCTTGTTTGGCGGTCCTCTTGCACCCACCCTCACACAGTTTGGGATGACTCCTCTTCTTGC
TGCTGTATACGTGGGTGCTATGCAAAACATTTTCAGCAAGAGTGCAAAATACAGTTTGTTTGATCCATGCAAAGAAATGGCCTATATTCCGTTGGATGAG
GACACCAAGGTTAAAGGGAAGGCAGCCATTGATGTTGTCTGCAATCCTTTGGGGAAGTCTGGAGGAGCTCTCATTCAACAGTTTATGATCTTAACCTTTG
GGTCGCTTGCCAATTCAACTCCTTACCTCGGAGGAATACTTCTGGTAATCGTGTTTGCATGGTTAGGTGCAGCCAAGTCTCTTGATACCCAGTTTACTGC
TCTGCGCCAGGAAGAAGAGCTCGAGAAGGAGATGGAAAGGGCGGCAGTGAAGATCCCTGTAGTGTCTCAAGAAGGTGGGAACGGCGCTCTTTCAAGTGGC
ACTGCACTCAATCCAACAACAGGTGACCCATCCAGCAGTTCATCTGAACCCTCATCTCCCCGTAACATCTAG
AA sequence
>Potri.003G058900.1 pacid=42786126 polypeptide=Potri.003G058900.1.p locus=Potri.003G058900 ID=Potri.003G058900.1.v4.1 annot-version=v4.1
MEAVLQTRGLLSLPPNPKGRVLYPSQGLKQRLFATKPKTFSGFSLSSNGVPKFPTSVSKPNGFFPKDRNLHICRAEAAAAADGQPLFGEETDKPKFLGIE
LATFKKIIPLGLMFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLANVLSKQALFYTVILPFIAFFGAFGFVLYPLSSYI
HPEAFADKLLNVLGPRFLGPLAIMRIWTFCLFYVMAELWGSVVVSVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVDGW
AVSLKGMMSIVVLMGLAICLCYWWVNTFVPLPTRSLKKKEKPKMSTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSAFMGD
FSTATGIATFSMMLLSQFIFDKYGWGVAAKITPTVLLLTGVGFFSLILFGGPLAPTLTQFGMTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDE
DTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGILLVIVFAWLGAAKSLDTQFTALRQEEELEKEMERAAVKIPVVSQEGGNGALSSG
TALNPTTGDPSSSSSEPSSPRNI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G80300 ATNTT1 nucleotide transporter 1 (.1) Potri.003G058900
[exp]
0 1 AATP1.2
AT5G61820 unknown protein Potri.015G108500
[exp]
1.73 0.9385
AT5G43060 Granulin repeat cysteine prote... Potri.014G024100
[exp]
3.16 0.9361 RD21.1
AT1G77760 GNR1, NIA1 nitrate reductase 1 (.1) Potri.002G088600
[exp]
4.69 0.9133 Pt-NIA1.1
AT1G76940 RNA-binding (RRM/RBD/RNP motif... Potri.012G019300
[exp]
7.41 0.8901
AT1G25520 Uncharacterized protein family... Potri.008G117900
[exp]
7.74 0.9145
AT1G02305 Cysteine proteinases superfami... Potri.002G184201
[exp]
7.93 0.9267
AT1G61560 ATMLO6, MLO6 MILDEW RESISTANCE LOCUS O 6, S... Potri.009G011900
[exp]
9.89 0.9186
AT1G28200 FIP1 FH interacting protein 1 (.1) Potri.002G102800
[exp]
10.95 0.9067 Pt-FIP1.3
Potri.005G223450
[exp]
12.48 0.9198
AT5G22510 INV-E, At-A/N-I... Arabidopsis alkaline/neutral i... Potri.010G236100
[exp]
13.60 0.9194

Potri.003G058900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.