Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52760 560 / 0 LysoPL2 lysophospholipase 2 (.1) AT1G11090 254 / 5e-83 alpha/beta-Hydrolases superfamily protein (.1) AT5G14980 203 / 5e-63 alpha/beta-Hydrolases superfamily protein (.1) AT3G62860 198 / 4e-61 alpha/beta-Hydrolases superfamily protein (.1) AT2G47630 192 / 2e-58 alpha/beta-Hydrolases superfamily protein (.1) AT3G55190 188 / 2e-57 alpha/beta-Hydrolases superfamily protein (.1) AT2G39420 185 / 3e-56 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 183 / 2e-55 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19290 181 / 2e-54 alpha/beta-Hydrolases superfamily protein (.1) AT2G39400 179 / 8e-54 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G175000 [exp] 632 / 0 AT1G52760 554 / 0.0 lysophospholipase 2 (.1) Potri.011G046500 [exp] 250 / 2e-81 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G129000 [exp] 204 / 2e-63 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 203 / 8e-63 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466700 [exp] 194 / 2e-59 AT5G14980 346 / 6e-119 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G040000 [exp] 192 / 6e-59 AT5G19290 507 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G212200 [exp] 191 / 1e-58 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G114800 [exp] 185 / 1e-55 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G049000 [exp] 180 / 2e-54 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035909 [exp] 606 / 0 AT1G52760 568 / 0.0 lysophospholipase 2 (.1) Lus10025754 [exp] 604 / 0 AT1G52760 564 / 0.0 lysophospholipase 2 (.1) Lus10011212 [exp] 241 / 6e-78 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10018466 [exp] 206 / 6e-65 AT1G11090 382 / 1e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10007877 [exp] 200 / 3e-61 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10040328 [exp] 191 / 1e-58 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10023448 [exp] 186 / 1e-53 AT2G39420 459 / 2e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10017601 [exp] 179 / 1e-53 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036530 [exp] 177 / 8e-53 AT5G19290 517 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041441 [exp] 177 / 2e-52 AT1G77420 496 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.003G059200.1 pacid=42785461 polypeptide=Potri.003G059200.1.p locus=Potri.003G059200 ID=Potri.003G059200.1.v4.1 annot-version=v4.1 ATGCCATCCGAAGCGCAGCAGCCCGAAGCGCCACCCAACTTCTGGGGCGACATGCCGGAGGAGGAGTACTATGCATCGCAAGGAGTGACCAATACCCAGT CACACTTTGAAACGCCGAATGGGAAGGTCTTCACGCAGGGTTTTCTCCCGTTGGATAAAAAGGTCAAAGCCACGGTGTATATGACCCACGGCTACGGATC TGATACTGGCTGGCTGTTTCAGAAGATTTGCATCAACTTTGCTACCTGGGGTTATGCTGTTTTTGCTGCTGATCTTCTTGGGCATGGCAGATCAGACGGT TTACGCTGCTACATGGGCGACATGGAGAAAATTGCTGCAGCGTCCGTATCGTTCTTCAAGCATGTGCGCTACAGCGAGCCATACAAGAACTTGCCCGCCT TCTTATTTGGCGAGTCAATGGGCGGACTAGCAACGATGCTGATGTATTTCCAATCAGAACCTGACACGTGGACGGGCGTGATTTTCTCGGCCCCACTTTT CGTCATACCGGAACCAATGAAACCTAGTAAGGCACACCTATTCATGTATGGCCTGCTCTTTGGATTTGCTGACACGTGGGCGGCCATGCCAGACAACAAA ATGGTAGGTAAAGCGATAAAGGACCCAGAGAAACTCAAGATCATAGCATCCAACCCCAGAAGATACACAGGCAAGCCTAGGGTGGGTACCATGAGAGAAA TTGCCAGAGTCTGCCAATACATACAGGACAATTTCTCCAAGGTTACGGTGCCGTTTTTGACTGTCCACGGGACCGCCGATGGGGTGACATGCCCAACATC ATCACAGTTGTTGTATGAGAAAGCCTCGAGTGAGGATAAGAGCTTGAAGATGTACGAGGGCATGTACCATTCTTTGATACAAGGCGAGCCTGACGAAAAT GCAAGTCTTGTCTTGAAGGATATGAGAGAGTGGATCGATGAGAGGGTTGAGAGGTATGGGTCTACAAAGAGTGATGATTGA
AA sequence Show only first row Show all	>Potri.003G059200.1 pacid=42785461 polypeptide=Potri.003G059200.1.p locus=Potri.003G059200 ID=Potri.003G059200.1.v4.1 annot-version=v4.1 MPSEAQQPEAPPNFWGDMPEEEYYASQGVTNTQSHFETPNGKVFTQGFLPLDKKVKATVYMTHGYGSDTGWLFQKICINFATWGYAVFAADLLGHGRSDG LRCYMGDMEKIAAASVSFFKHVRYSEPYKNLPAFLFGESMGGLATMLMYFQSEPDTWTGVIFSAPLFVIPEPMKPSKAHLFMYGLLFGFADTWAAMPDNK MVGKAIKDPEKLKIIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSQLLYEKASSEDKSLKMYEGMYHSLIQGEPDEN ASLVLKDMREWIDERVERYGSTKSDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Potri.003G059200 [exp]	0	1
AT2G45300			RNA 3'-terminal phosphate cycl...		Potri.002G146400 [exp]	1.00	0.9253
AT4G34200		EDA9	embryo sac development arrest ...		Potri.001G300900 [exp]	3.46	0.8823
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Potri.008G099300 [exp]	3.87	0.9003	AdoMet1,SAMS.2
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.014G114700 [exp]	4.47	0.9191	Pt-SAM1.1
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.002G242500 [exp]	6.00	0.9105
AT1G06660		JASON	JASON, unknown protein		Potri.005G205700 [exp]	10.19	0.8958
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Potri.002G168400 [exp]	10.95	0.8780
AT5G26780		SHM2	serine hydroxymethyltransferas...		Potri.002G109200 [exp]	11.31	0.9092	SHMT3
AT5G43230			unknown protein		Potri.008G177500 [exp]	12.48	0.8607
AT5G03300		ADK2	adenosine kinase 2 (.1)		Potri.008G038100 [exp]	13.03	0.8846

Compare expression of checked genes

Potri.003G059200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.