Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17250 1094 / 0 Alkaline-phosphatase-like family protein (.1) AT2G22530 179 / 7e-46 Alkaline-phosphatase-like family protein (.1) AT3G01380 58 / 4e-08 transferases;sulfuric ester hydrolases;catalytics;transferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G010600 [exp] 181 / 2e-46 AT2G22530 941 / 0.0 Alkaline-phosphatase-like family protein (.1) Potri.001G350700 [exp] 48 / 3e-05 AT3G01380 1392 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006806 [exp] 1196 / 0 AT5G17250 1085 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10005793 [exp] 1191 / 0 AT5G17250 1088 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10025722 [exp] 172 / 9e-44 AT2G22530 1008 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10035939 [exp] 80 / 5e-15 AT2G22530 410 / 1e-129 Alkaline-phosphatase-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [poplar] [flax] Alk_phosphatase PF01663 [poplar] [flax] Phosphodiest Type I phosphodiesterase / nucleotide pyrophosphatase
Representative CDS sequence Show only first row Show all	>Potri.003G059300.1 pacid=42785413 polypeptide=Potri.003G059300.1.p locus=Potri.003G059300 ID=Potri.003G059300.1.v4.1 annot-version=v4.1 ATGGGGAGACGTTGGTGGATGAAATGGTACAGCTGGGTGATACTGGTGGCTCACGTGTTTGCAATACTGATATTCACTAGAGGATTCTTGCTTACTCGAA CAGAACTTCCATATTACAGCCACGGCAGCGACATATCTCAATCTCCCTGCTTCTCCTCTACCAGCACTAATCACAGTTGGAATAAACCAGTTGTGGATCG CCTTGTCATCATTGTTCTCGATGCAATCAGGTTTGATTTCGTTGCTCCGAGCGTATTTTTTCAAGAAAAGAAGGCATGGATGGACAAATTACCTGTGCTG CAAAAGATGGCATTTGCTGAAGGATCGTCTGCCAAGATTTTCAAAGCTATTGCTGATCCTCCTACCACTAGCCTCCAGCGTTTGAAGGGTTTGACAACGG GTGGATTGCCGACTTTTATAGATGTTGGAAATAGCTTTGGTGCTCCTGCCATTGTTGAAGATAACTTTATACATCAGCTGGTTGAAAACGGGAAGCGAGT AGTGATGATGGGTGATGATACATGGATTCAGTTGTTTCCTCATCATTTTAATAATTCTCATCCTTACCCGTCTTTTAATGTTAAGGATCTTCATACGGTA GATAATGGATGCATCGAACACCTATTTCCTGCCCTATATCAAGACGACTGGGATGTTCTTATTGCGCATTTTCTTGGCGTGGATCATGCTGGGCATATAT TTGGTGTTGATTCCATGCCAATGATAGAAAAGTTGGAGCAGTACAATCTCATGTTAGAGAAAGTAATCAAAGTCCTCGGGAGCCAATCTGAACCAGGTGG CTTACATGAAAATACTTTTCTTCTGGTTATGGGTGACCATGGACAAACATTAAATGGTGATCATGGTGGTGGAAGTGCTGAAGAGGTTGAAACGTCAATT TTTGCAATGAGTTTTAAGAAGCCTCCAACTTCCATTCCATCTGAATTAGATACGTCATCTTGTAAACTAGATTTGGATGGAAAGAAGAAATGTACCAGCT CCATCCAACAGCTTGATTTTGCAGTGACAGTGTCTGCTCTGCTTGGTATTCCGTTTCCTTTTGGAAGCATCGGACGAGTTAATCCTGAGCTATATGCTTT AGGTGCTGGTACATGGAATTTGGATGGCATAAATGCGAGGGATTCCTCCAATCTGTCAGAATTGGAGGAATGGTTACTGAATTATGTCAATGTACTCTGC ATCAATTCCTGGCAGGTGAAAAGATACATTGATGTCTATTCAGCTTCATCTGTCATTGGATTTTCCTCTGAAGACTTGTTGCACATATCAAATGCATATG TTCAGGCAGAGCAGAATTGGGCAAACAGTACTAAGAACTTACTATTGCATAGAAATGAAAGAAGCCACACATTGTTACCTGCTCTTACAAGGCAAATTGA TTTTTATTTTAGCTTCCTATCAAATGTTTCAGAGCTGGCTCGCTCCAAATGGACTGAATTTAATCTGAAGCTGATGGGAATTGGTCTCGGGACCATGTTA ATTTCACTCTTTATAATATTTCTTGCCATTCAAAGAGTGAATAATTTGTATACGACTTCTCTTTTGTCTCCTGGAGGTTCTGGAATTTCCTTTGAATTAA TATTTGCCTTCTTTGTTGTGGCAATACGTGCATGTAGCTTCCTGTCAAACAGTTTTATTTTGGAGGAAGGAAAAGTGGCAAGTTTTCTTTTGGCCACCAC CAGCATTGTCAGGCTACGTTCTTCAATCATGAAAAAGAAGATGCTATTTGAAGCAGTAAGTTTTCTACTGTTGATATCCATTCTCAGATTTACCATTGAA GTCGGGCTGTCAAAGCAGGCTGCCACTTCTTTATTCCTGAGCGCGTCTCCTTCATGGGTACTTGGGGTTGCCCCAGGTCATCCACTGTGGACATACATGG CTGAAATTGGCCCAATTCTTGCCGTCATATTATTGGCATGCTTGCTATGCAGGACCATCGCCAGCAGCATTTTTGGGGGTCTTTGGAAGTATATTACCAT GGCAACCATTTTAAGCTATGTGCTTATAGCAGTTTATTGGGGAGCTGAAAGTAGCATACCGACCCTAGCACTGTTGCTTCAAGGAATGGCAAAAGGTCAC ATCCCAAGAATGATTTATGCAATTGGGCTGGGTCAACTGCTTTTGTTTGCGGTTGCACATTTGTTTGATAAAGATAGAGAGTTAGATTACAAGAGGAGCT TGGTAGTGAAAACAGTATCCATTTTATCTGCTTGGAGTCCAACAATCATCATTCTGTCAGGAAAACAAGGTTCCTTGGTAGCATTGGCGCTGATAATTGG AGGTTATTGCATAGTGAAGTTGGAAAGTATGGAAGACAGTGACTCTGATGCTATTTTTACTTTCAATCCTCTTGCTATTTCACAGTGGAACCTCTTAGCT GTGTGTCTATTTTTTGCCACTGGTCATTGGTGTGCATTTGATGGCCTGCGGTATGGTGCTGCATTTATTGGGTTTGATGAATTTGTCCTTGTTCGTCAAG CGATCCTTCTTACAATAGATACATTTGGCTTTTCTCACATTCTTCCTGTTCTTGCACTTCCATTTCTGGCTGGTTGCAATTTTTTGTTTGGTCAGAATGA CCATGGAAAGGATTTTCGTTTCACCCAGTTGTCTCAGATGTATATGATGTATGGACTTATTACTGCCACCACAGTCACTGTCACCATAATATGCGTTACC ATTCAAAGGCGCCATCTAATGGTATGGGGACTATTTGCTCCAAAATTTGTTTTTGATGTGGTCGGCCTTGTTCTTACCGATGTGCTGATTTGCCTAGCTT CACTTTTATACTCTGGTCGACTAGAGGATGATGATACACAGGCGGTTCAGAAAACTGAACAGTAA
AA sequence Show only first row Show all	>Potri.003G059300.1 pacid=42785413 polypeptide=Potri.003G059300.1.p locus=Potri.003G059300 ID=Potri.003G059300.1.v4.1 annot-version=v4.1 MGRRWWMKWYSWVILVAHVFAILIFTRGFLLTRTELPYYSHGSDISQSPCFSSTSTNHSWNKPVVDRLVIIVLDAIRFDFVAPSVFFQEKKAWMDKLPVL QKMAFAEGSSAKIFKAIADPPTTSLQRLKGLTTGGLPTFIDVGNSFGAPAIVEDNFIHQLVENGKRVVMMGDDTWIQLFPHHFNNSHPYPSFNVKDLHTV DNGCIEHLFPALYQDDWDVLIAHFLGVDHAGHIFGVDSMPMIEKLEQYNLMLEKVIKVLGSQSEPGGLHENTFLLVMGDHGQTLNGDHGGGSAEEVETSI FAMSFKKPPTSIPSELDTSSCKLDLDGKKKCTSSIQQLDFAVTVSALLGIPFPFGSIGRVNPELYALGAGTWNLDGINARDSSNLSELEEWLLNYVNVLC INSWQVKRYIDVYSASSVIGFSSEDLLHISNAYVQAEQNWANSTKNLLLHRNERSHTLLPALTRQIDFYFSFLSNVSELARSKWTEFNLKLMGIGLGTML ISLFIIFLAIQRVNNLYTTSLLSPGGSGISFELIFAFFVVAIRACSFLSNSFILEEGKVASFLLATTSIVRLRSSIMKKKMLFEAVSFLLLISILRFTIE VGLSKQAATSLFLSASPSWVLGVAPGHPLWTYMAEIGPILAVILLACLLCRTIASSIFGGLWKYITMATILSYVLIAVYWGAESSIPTLALLLQGMAKGH IPRMIYAIGLGQLLLFAVAHLFDKDRELDYKRSLVVKTVSILSAWSPTIIILSGKQGSLVALALIIGGYCIVKLESMEDSDSDAIFTFNPLAISQWNLLA VCLFFATGHWCAFDGLRYGAAFIGFDEFVLVRQAILLTIDTFGFSHILPVLALPFLAGCNFLFGQNDHGKDFRFTQLSQMYMMYGLITATTVTVTIICVT IQRRHLMVWGLFAPKFVFDVVGLVLTDVLICLASLLYSGRLEDDDTQAVQKTEQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17250			Alkaline-phosphatase-like fami...		Potri.003G059300 [exp]	0	1
AT2G22530			Alkaline-phosphatase-like fami...		Potri.007G010600 [exp]	1.41	0.7793
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Potri.016G075500 [exp]	3.87	0.7522
AT3G03810		EDA30	embryo sac development arrest ...		Potri.019G036600 [exp]	4.24	0.7680
AT2G47960			unknown protein		Potri.004G040500 [exp]	4.47	0.6935
AT4G16460			unknown protein		Potri.006G016100 [exp]	8.00	0.7169
AT5G42320			Zn-dependent exopeptidases sup...		Potri.002G010800 [exp]	8.24	0.6618
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Potri.015G022400 [exp]	9.94	0.6912
AT5G60580			RING/U-box superfamily protein...		Potri.016G022900 [exp]	12.04	0.7326
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Potri.018G084300 [exp]	15.29	0.6381	Pt-LJRH102.2
AT5G27970			ARM repeat superfamily protein...		Potri.013G035100 [exp]	15.58	0.7050

Compare expression of checked genes

Potri.003G059300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.