Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15490 845 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT1G80280 840 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT1G52750 719 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT2G40095 137 / 4e-37 Alpha/beta hydrolase related protein (.1) AT3G55880 132 / 5e-35 SUE4 sulphate utilization efficiency 4, Alpha/beta hydrolase related protein (.1.2) AT3G10840 123 / 9e-30 alpha/beta-Hydrolases superfamily protein (.1) AT1G13820 71 / 7e-13 alpha/beta-Hydrolases superfamily protein (.1) AT5G19850 70 / 1e-12 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 62 / 5e-10 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G38520 62 / 5e-10 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G174900 [exp] 1204 / 0 AT1G80280 828 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G067700 [exp] 133 / 2e-35 AT2G40095 229 / 1e-76 Alpha/beta hydrolase related protein (.1) Potri.010G189600 [exp] 122 / 8e-32 AT2G40095 207 / 6e-68 Alpha/beta hydrolase related protein (.1) Potri.013G092900 [exp] 114 / 1e-26 AT3G10840 404 / 3e-137 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G219700 [exp] 72 / 3e-13 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G063900 [exp] 71 / 5e-13 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G158800 [exp] 55 / 7e-08 AT1G13820 489 / 4e-175 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 52 / 1e-06 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G120000 [exp] 49 / 1e-05 AT5G39220 433 / 9e-153 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028294 [exp] 130 / 3e-34 AT2G40095 262 / 1e-89 Alpha/beta hydrolase related protein (.1) Lus10030405 [exp] 125 / 7e-33 AT2G40095 220 / 3e-73 Alpha/beta hydrolase related protein (.1) Lus10014849 [exp] 124 / 5e-32 AT2G40095 212 / 8e-70 Alpha/beta hydrolase related protein (.1) Lus10040195 [exp] 117 / 2e-29 AT2G40095 231 / 8e-77 Alpha/beta hydrolase related protein (.1) Lus10028989 [exp] 111 / 8e-26 AT3G10840 447 / 9e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10025172 [exp] 78 / 2e-14 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10003969 [exp] 68 / 8e-12 AT5G38520 426 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028315 [exp] 57 / 3e-08 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036913 [exp] 56 / 6e-08 AT1G13820 466 / 5e-166 alpha/beta-Hydrolases superfamily protein (.1) Lus10003690 [exp] 43 / 0.0003 AT3G10840 227 / 2e-72 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.003G059400.2 pacid=42785104 polypeptide=Potri.003G059400.2.p locus=Potri.003G059400 ID=Potri.003G059400.2.v4.1 annot-version=v4.1 ATGGCGCCGGCGCCGAGAGGATGTTGGGGGGTGGCGGCGGAGAAGGCCAGGAGGTGTGTGCGGACGGTGATTTTCATGGTGGCGATGGTAGCGTCGCTCT TGGTATCATCGATGCCGGTGCTTGTGGCTATTGGCGACGTGGTGGTTCCTTTCTTTTTGGTGTCGAGCTTCACGTGCCTGACGTGTTTTGGATTCAAAAG TCATTTGCGTAAATACTCTTTTAAGAGCTCCTTCACCGATATCCCGCTCGTTTCTCTTATCAGATCTTTCCTCATCATCTGTGTTTATTCAATGTGTGAC GCACCGGCACTATCACATGGACCTTACCTTGGAACTGTGACACTATGTTCTGTTGTTTCAATCGTGCTTCTTTCGATTAAGACGTGCGTTTTCACCGTCA ATTCTCAAATTGAGGCTGAAGCTTCAACTTCTTCAATCTCAAGGCAGAAGCTTCATCTGAAGAAGTCATGGGGGATGCCTGTTTTGTTTCTTTCTTCAGT AGTCTTTGCGCTTGGTCACACCGTGGTTGCTTATAGAACTAGCTGCAGAGCAAGGAGAAAGCTTATGTTTCACCGAGCTGACCCCGAAGCTGTGCTTTCA TGTAAAAGTGTCTTCTCGGGCTATCAGAAGGTTCCACGATCTCCCACTCCCACAGCAGGAAGAACCCCTAAAAGTGACAGTGAAATGAAGCGAAAGCCTT TCGGAACAACTCGTGATGAAGGGGAACTCCCAGTCAGATTACTTGCTGACATTGACAGCCTGTTCATTACGTGCCGGGGACTTACAGTCCACTACAAGCT CTGCTTTCCTGGTGCACCCCCGTGTTATTTATACTCAACTGCCGCTCTTGAATCTAGTTCTAGCTGTAGCTCACCAAAGCTAGCACCGGGAAGGTTAAGA CTTGAAAGGCAGCCGTTTAGCGCCGTAGTAAAAACCCAGCATCATCTACATAGGAGTTGTAGCAATCAATTTTACAGCTCTTCACTGTATGCTCCGCTAT TGGATAGTTCTCCAACTTCTGTTCTATCTGAAGAAATTCCTGTTCTCAACCTAGAAGATGCTGTTCAGGAGGATGGAATATGTGAACCGAAACCTGTGAT TCCTGGTCAAGACATGGAGGAAAGTAGCCAGTTAGGTATCGTTCTAGTTCATGGGTTTGGAGGTGGAGTTTTCTCATGGAGGCATGTGATGGGAGTGTTA TGTCAGCAGGTTGGTTGTAAAGTTGCTGCTTTTGATAGGCCTGGTTGGGGGTTAACTTCTCGGCTACGCCATAAGGATTGGGAGGATAAAGAACTGCCCA ACCCATACAAGCTTGAAACTCAGGTTGACCTGCTTCTTTCTTTCTGTTCTGAGATGGGTTTTTCTTCAGTGGTGCTTATCGGTCATGATGATGGAGGCTT GCTTGCTTTAAAAGCTGTTCAAAGAGTTCAAGCATCAATGAATTCTTTCAATGTTACAATTAAAGGGGTGGTATTGCTAAATGTTAGCTTGTCTAGAGAA GTGGTTCCTGCCTTTGCTAGGATACTTCTACGCACTTCTCTTGGGAAAAAACACTTGGTTCGTTCTCTACTGCGAACAGAAATTATTCAAGTGGTGAATA GGCGCGCATGGTATGATGCTACCAAGCTAACGACAGAGGTTTTGAGTCTTTATAAGGCACAATTATGCGTCGAAGGTTGGGATGAAGCAGTCCATGAGAT AGGTAAACTTTCGTGTGAGACAGTCCTTTCACCACAAAATTCTGCATCGTTGTTGAAGGCTGTAGAAGGCATGCCAGTGTTAGTCATTGCAGGTGCTGAA GATGCCCTCGTTCCACTTAAATCTTCTCAAGCCATGGCTTCAAAACTTGTAAATTCTAGACTGGTCGCTATATCTGGATGCGGCCATCTTCCACATGAAG AGTGCCCCAAGGCATTACTGGCAGCTATAACACCGTTCATAAGCAGACTCTTGGTTGAACCAGATTTGGAAAACCAATAG
AA sequence Show only first row Show all	>Potri.003G059400.2 pacid=42785104 polypeptide=Potri.003G059400.2.p locus=Potri.003G059400 ID=Potri.003G059400.2.v4.1 annot-version=v4.1 MAPAPRGCWGVAAEKARRCVRTVIFMVAMVASLLVSSMPVLVAIGDVVVPFFLVSSFTCLTCFGFKSHLRKYSFKSSFTDIPLVSLIRSFLIICVYSMCD APALSHGPYLGTVTLCSVVSIVLLSIKTCVFTVNSQIEAEASTSSISRQKLHLKKSWGMPVLFLSSVVFALGHTVVAYRTSCRARRKLMFHRADPEAVLS CKSVFSGYQKVPRSPTPTAGRTPKSDSEMKRKPFGTTRDEGELPVRLLADIDSLFITCRGLTVHYKLCFPGAPPCYLYSTAALESSSSCSSPKLAPGRLR LERQPFSAVVKTQHHLHRSCSNQFYSSSLYAPLLDSSPTSVLSEEIPVLNLEDAVQEDGICEPKPVIPGQDMEESSQLGIVLVHGFGGGVFSWRHVMGVL CQQVGCKVAAFDRPGWGLTSRLRHKDWEDKELPNPYKLETQVDLLLSFCSEMGFSSVVLIGHDDGGLLALKAVQRVQASMNSFNVTIKGVVLLNVSLSRE VVPAFARILLRTSLGKKHLVRSLLRTEIIQVVNRRAWYDATKLTTEVLSLYKAQLCVEGWDEAVHEIGKLSCETVLSPQNSASLLKAVEGMPVLVIAGAE DALVPLKSSQAMASKLVNSRLVAISGCGHLPHEECPKALLAAITPFISRLLVEPDLENQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15490			alpha/beta-Hydrolases superfam...		Potri.003G059400 [exp]	0	1
AT1G17820			Putative integral membrane pro...		Potri.017G155000 [exp]	2.82	0.8782
AT4G02050		STP7	sugar transporter protein 7 (....		Potri.006G189100 [exp]	3.74	0.8487	STA.1
AT3G54000			unknown protein		Potri.006G093000 [exp]	4.58	0.8822
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Potri.008G136800 [exp]	7.07	0.8922	Pt-HSF5.2
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.016G069700 [exp]	7.74	0.8655	Pt-BLH1.2
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.005G116400 [exp]	7.74	0.8646
AT4G23950			Galactose-binding protein (.1....		Potri.001G089700 [exp]	9.27	0.8827
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Potri.014G112700 [exp]	10.19	0.8631
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.001G216600 [exp]	10.58	0.8311
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.006G203000 [exp]	14.07	0.8578

Compare expression of checked genes

Potri.003G059400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.