Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15610 574 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT1G52730 573 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G15470 548 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G46290 148 / 1e-41 Transducin/WD40 repeat-like superfamily protein (.1) AT2G46280 136 / 4e-37 TIF3I1, TRIP-1 TGF-beta receptor interacting protein 1 (.1.2.3) AT3G49660 88 / 2e-19 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 82 / 2e-17 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 76 / 2e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT1G71840 74 / 1e-14 transducin family protein / WD-40 repeat family protein (.1) AT3G18130 73 / 3e-14 RACK1C_AT receptor for activated C kinase 1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G174600 [exp] 686 / 0 AT1G52730 577 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G141400 [exp] 147 / 1e-41 AT2G46290 553 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G100101 [exp] 143 / 8e-40 AT2G46290 553 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 76 / 2e-15 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 75 / 4e-15 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 74 / 2e-14 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 73 / 2e-14 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G171600 [exp] 73 / 7e-14 AT2G33340 830 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.008G002700 [exp] 71 / 4e-13 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019450 [exp] 625 / 0 AT3G15610 577 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10043302 [exp] 547 / 0 AT3G15610 502 / 2e-180 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021857 [exp] 143 / 8e-40 AT2G46290 549 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10010332 [exp] 142 / 2e-39 AT2G46290 550 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 76 / 4e-15 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 74 / 2e-14 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10003855 [exp] 73 / 3e-14 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 73 / 3e-14 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 72 / 7e-14 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002090 [exp] 71 / 1e-13 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.003G059500.1 pacid=42786454 polypeptide=Potri.003G059500.1.p locus=Potri.003G059500 ID=Potri.003G059500.1.v4.1 annot-version=v4.1 ATGGACAAGAAGAAGGTGGCAGTGCCATTAGTGTGCCATGGACATTCACGTCCTGTTGTGGATTTGTTTTACAGTCCTGTCACTCCTGATGGCTTCTTTC TCATCAGTGCTAGCAAGGATTCTAGTCCAATGTTGAGAAATGGGGAGACTGGTGATTGGATTGGAACATTTGAGGGGCACAAGGGTGCAGTGTGGAGTTG CTGCCTGGACACTAGTGCTTTGCGTGCAGCATCTGGCTCTGCTGATTTTTCTGCAAAACTGTGGGATGCATTGACAGGGGATGAATTACACTCTTTTGAG CATAAGCATATTGTTCGAGCATGCACATTTTCAGAGGATACACACCTTCTACTTACTGGTGGAGTTGAAAAAATTCTTCGTATATTTGACTTGAATCGTC CAGATGCACCCCCAAGAGAAGTTGACAATTCACCAGGTTCAATCAGAACTGTTGCATGGCTTCACAGTGATCAGACCATATTAAGTTCTTGTACTGATAT TGGTGGTGTGAGGTTATGGGATGTCCGAAGTGGCAAAATTGTTCAAACTCTTGAAACAAAGTCACCTGTAACAAGTGCTGAAGTGAGTCGGGATGGTCGC TATATAACTACTGCTGATGGATCTACAGTTAAATTTTGGGATGCAAATCACTTTGGATTGGTGAAAAGCTATGACATGCCATGCAATGTGGAATCAGCTT CATTGGAACCAAAACTTGGTAATAAGTTTGTTGCTGGAGGAGAAGATATGTGGATCCATGTCTTTGATTTCCACACAGGAGAACAGATCGGATGCAACAA GGGTCACCATGGTCCTGTTCATTGTTTGCGATTCTCACCTGGAGGAGAATCTTATGCATCAGGATCCGAAGATGGAACCATCAGAATATGGCAACTGGGC CCTGCAATTCATGATGAGAATGATTCTGTTCCTGGGAACGGACCAACTGGGAAAGTGGAGGTTTCTGCTGACGATGTTGCCCAAAAGATCGAGGGCTTTC ATATTAGCGGAGAAGGGAAAACTACGGAGAAGGAAAATGCAACAGATGCCTGA
AA sequence Show only first row Show all	>Potri.003G059500.1 pacid=42786454 polypeptide=Potri.003G059500.1.p locus=Potri.003G059500 ID=Potri.003G059500.1.v4.1 annot-version=v4.1 MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTSALRAASGSADFSAKLWDALTGDELHSFE HKHIVRACTFSEDTHLLLTGGVEKILRIFDLNRPDAPPREVDNSPGSIRTVAWLHSDQTILSSCTDIGGVRLWDVRSGKIVQTLETKSPVTSAEVSRDGR YITTADGSTVKFWDANHFGLVKSYDMPCNVESASLEPKLGNKFVAGGEDMWIHVFDFHTGEQIGCNKGHHGPVHCLRFSPGGESYASGSEDGTIRIWQLG PAIHDENDSVPGNGPTGKVEVSADDVAQKIEGFHISGEGKTTEKENATDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52730			Transducin/WD40 repeat-like su...		Potri.003G059500 [exp]	0	1
AT1G08750			Peptidase C13 family (.1.2.3)		Potri.019G014000 [exp]	1.00	0.8266
AT5G53280		PDV1	plastid division1 (.1)		Potri.012G032200 [exp]	4.69	0.7873
AT4G37660			Ribosomal protein L12/ ATP-dep...		Potri.004G224300 [exp]	4.89	0.8045
AT2G40800			unknown protein		Potri.019G062200 [exp]	8.66	0.8134
AT5G39600			unknown protein		Potri.012G106900 [exp]	10.77	0.8097
AT2G30942			Protein of unknown function (D...		Potri.002G263300 [exp]	17.32	0.7730
AT5G40580		PBB2	20S proteasome beta subunit PB...		Potri.017G071100 [exp]	18.11	0.8138	PBB1.1
AT3G27230			S-adenosyl-L-methionine-depend...		Potri.002G024800 [exp]	22.75	0.7857	RAD3.2
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.008G194900 [exp]	29.74	0.8085	Pt-POR1.1
AT3G02530			TCP-1/cpn60 chaperonin family ...		Potri.004G101500 [exp]	37.34	0.7844

Compare expression of checked genes

Potri.003G059500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.