Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25460 513 / 0 Protein of unknown function, DUF642 (.1) AT5G11420 511 / 0 Protein of unknown function, DUF642 (.1) AT1G80240 495 / 3e-176 Protein of unknown function, DUF642 (.1) AT4G32460 494 / 6e-176 Protein of unknown function, DUF642 (.1.2) AT3G08030 376 / 3e-129 Protein of unknown function, DUF642 (.1.2) AT2G41810 368 / 4e-126 Protein of unknown function, DUF642 (.1) AT2G41800 360 / 5e-123 Protein of unknown function, DUF642 (.1) AT2G34510 338 / 5e-114 Protein of unknown function, DUF642 (.1) AT1G29980 333 / 9e-112 Protein of unknown function, DUF642 (.1.2) AT5G14150 145 / 2e-39 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G174400 [exp] 725 / 0 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.018G031100 [exp] 521 / 0 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G250100 [exp] 521 / 0 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.009G058800 [exp] 396 / 4e-137 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.001G263900 [exp] 393 / 5e-136 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.006G050400 [exp] 374 / 3e-128 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050300 [exp] 374 / 3e-128 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.016G056100 [exp] 367 / 1e-125 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.011G087500 [exp] 334 / 2e-112 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013112 [exp] 531 / 0 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1) Lus10008080 [exp] 526 / 0 AT5G11420 604 / 0.0 Protein of unknown function, DUF642 (.1) Lus10005474 [exp] 503 / 6e-179 AT5G11420 581 / 0.0 Protein of unknown function, DUF642 (.1) Lus10025753 [exp] 499 / 2e-177 AT5G11420 453 / 8e-160 Protein of unknown function, DUF642 (.1) Lus10035910 [exp] 492 / 5e-174 AT5G11420 452 / 9e-159 Protein of unknown function, DUF642 (.1) Lus10029501 [exp] 387 / 2e-133 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10039602 [exp] 384 / 3e-132 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10016393 [exp] 365 / 1e-124 AT3G08030 490 / 1e-174 Protein of unknown function, DUF642 (.1.2) Lus10016394 [exp] 357 / 1e-121 AT3G08030 469 / 2e-166 Protein of unknown function, DUF642 (.1.2) Lus10029502 [exp] 356 / 2e-121 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF04862 [poplar] [flax] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Potri.003G059800.1 pacid=42784887 polypeptide=Potri.003G059800.1.p locus=Potri.003G059800 ID=Potri.003G059800.1.v4.1 annot-version=v4.1 ATGCCAAACATTCCCAGGCCTCTCCTCCACCTCCTCCCCCTCCTCTCTATCTGTAAATCAACCACAATGTACAGAGCCACCGTGCTGTTAGTGACCCTTT GCATCACCTCGCAGATTGCATCGTCAGTCACCGATGGTTTATTGCCTAATGGAGACTTCGAGCAGGGGCCCAGGCCATCAGAAATGAAAGGAACAGTGGT GACAGCCAAGAACGCAATTCCTAACTGGGAAATTTCTGGCTTCATCGAGTACATAAAATCAGGGCATAAACAAGGTGACATGGTGCTGGTAGTGCCTGCT GGAGCCTACGCAGTTCGATTAGGGAACGAAGCATCGATTAAACAAAGAGTGAAGGTCACTCAAGGCCTCTTCTACTCGTTAACTTTCAATGTGGCTCGCA CTTGTGCCCAGGAGGAGAAATTAAACGTCTCTGTTTCACCAAATTCGGAACCAAGAGATTGGGGAATCTTGCCCATGCAAACAATGTATAGTAGCAATGG ATGGGATGCTTATGCGTGGGCCTTCCAAGCTGATGGGCCTGAAGTTGAGATCTCCATCCATAACCCAGGTGTAGAGGAGGATGCTGCTTGCGGCCCACTT ATTGATTCTGTCGCGTTAAAGCTTTTGTCCAATCCTAAACGTCCTAAAGACAACTTGTTAAAGAATGGAAATTTTGAAGAGGGTCCTTACGTGTTTCCTA ACGCAGACTGGGGTGTCCTTGTCCCTCCCAACATTGAAGATGACCATTGCCCTTTACCTGGATGGATGGTTGACTCGCTCAAGGCAGTAAAATATATAGA TAGCGATCACTTTACAGTCCCAGAAGGAAAGAGAGCCGTTGAACTTGTGGCAGGAAAAGAAAGTGCTATCTCACAAGTTGTAAAAACCACAATCAGTAAG ATATATGCCCTCACATTCAGTGTTGGGGACACTAGCAACTCATGCGTGGGATCAATGGTAGTAGAGGTATATGCTGGTAAGGATAAGACTCAAGTTCCTT ATGAATCTAATGGCAAAGGAGGGTTCAAGCATGCCAAGTTCGTGTTCAAGGCCATATCGAACCACACGAGAATTACTTTCCTTAGCTCATTTTACACCAT GAAAAGTGACAACTCTGGTTCTCTATGTGGTCCAGTATTAGATGATGTAAAGCTGGTTAGTGTTCGAAATCCAAGGCGTCATCTTGCATAA
AA sequence Show only first row Show all	>Potri.003G059800.1 pacid=42784887 polypeptide=Potri.003G059800.1.p locus=Potri.003G059800 ID=Potri.003G059800.1.v4.1 annot-version=v4.1 MPNIPRPLLHLLPLLSICKSTTMYRATVLLVTLCITSQIASSVTDGLLPNGDFEQGPRPSEMKGTVVTAKNAIPNWEISGFIEYIKSGHKQGDMVLVVPA GAYAVRLGNEASIKQRVKVTQGLFYSLTFNVARTCAQEEKLNVSVSPNSEPRDWGILPMQTMYSSNGWDAYAWAFQADGPEVEISIHNPGVEEDAACGPL IDSVALKLLSNPKRPKDNLLKNGNFEEGPYVFPNADWGVLVPPNIEDDHCPLPGWMVDSLKAVKYIDSDHFTVPEGKRAVELVAGKESAISQVVKTTISK IYALTFSVGDTSNSCVGSMVVEVYAGKDKTQVPYESNGKGGFKHAKFVFKAISNHTRITFLSSFYTMKSDNSGSLCGPVLDDVKLVSVRNPRRHLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25460			Protein of unknown function, D...		Potri.003G059800 [exp]	0	1
					Potri.006G229100 [exp]	1.41	0.8794
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.005G028100 [exp]	3.00	0.8614
AT5G59480			Haloacid dehalogenase-like hyd...		Potri.001G242300 [exp]	3.74	0.7925
AT5G59845			Gibberellin-regulated family p...		Potri.014G020100 [exp]	8.66	0.7938
					Potri.019G068802 [exp]	10.39	0.8020
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Potri.012G079200 [exp]	10.95	0.7416
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.003G009000 [exp]	15.87	0.7362
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Potri.002G018800 [exp]	32.68	0.7929
AT3G23770			O-Glycosyl hydrolases family 1...		Potri.017G060300 [exp]	33.19	0.7222
AT5G26250			Major facilitator superfamily ...		Potri.010G090000 [exp]	35.24	0.7178

Compare expression of checked genes

Potri.003G059800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.