Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15620 909 / 0 UVR3 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) AT1G04400 185 / 4e-51 FHA, AT-PHH1, CRY2, ATCRY2 cryptochrome 2 (.1.2) AT5G24850 166 / 9e-45 CRY3 cryptochrome 3 (.1) AT4G08920 151 / 7e-39 OOP2, HY4, BLU1, CRY1, ATCRY1 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) AT2G47590 88 / 2e-18 PHR2 photolyase/blue-light receptor 2 (.1) AT4G25290 45 / 9e-05 DNA photolyases;DNA photolyases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G071200 [exp] 177 / 5e-48 AT1G04400 799 / 0.0 cryptochrome 2 (.1.2) Potri.002G096900 [exp] 170 / 2e-45 AT4G08920 1017 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Potri.005G164700 [exp] 169 / 5e-45 AT4G08920 999 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Potri.006G277500 [exp] 155 / 1e-40 AT5G24850 781 / 0.0 cryptochrome 3 (.1) Potri.002G204000 [exp] 86 / 1e-17 AT2G47590 530 / 0.0 photolyase/blue-light receptor 2 (.1) Potri.014G128500 [exp] 83 / 9e-17 AT2G47590 540 / 0.0 photolyase/blue-light receptor 2 (.1) Potri.008G166632 [exp] 57 / 4e-09 AT1G04400 249 / 5e-80 cryptochrome 2 (.1.2) Potri.015G129500 [exp] 45 / 0.0001 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022095 [exp] 754 / 0 AT3G15620 725 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10000521 [exp] 296 / 9e-97 AT3G15620 295 / 7e-98 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10021188 [exp] 168 / 1e-45 AT1G04400 747 / 0.0 cryptochrome 2 (.1.2) Lus10011822 [exp] 168 / 1e-44 AT1G04400 781 / 0.0 cryptochrome 2 (.1.2) Lus10033446 [exp] 162 / 2e-42 AT4G08920 1009 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Lus10020930 [exp] 155 / 1e-40 AT4G08920 899 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Lus10020878 [exp] 140 / 8e-36 AT5G24850 732 / 0.0 cryptochrome 3 (.1) Lus10033499 [exp] 100 / 7e-23 AT5G24850 440 / 4e-153 cryptochrome 3 (.1) Lus10007880 [exp] 88 / 4e-18 AT2G47590 521 / 0.0 photolyase/blue-light receptor 2 (.1) Lus10031137 [exp] 44 / 0.0003 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00875 [poplar] [flax] DNA_photolyase DNA photolyase CL0039 [poplar] [flax] PF03441 [poplar] [flax] FAD_binding_7 FAD binding domain of DNA photolyase
Representative CDS sequence Show only first row Show all	>Potri.003G060000.5 pacid=42784652 polypeptide=Potri.003G060000.5.p locus=Potri.003G060000 ID=Potri.003G060000.5.v4.1 annot-version=v4.1 ATGCAATTATCACTTTGTTTGTCTAAACCTGCCCAGCACTTGAAGAACCCTCTAATGGCTGCATCCGGGTCGGGCTCCATCATATGGTTCAGGAAAGGGC TTCGGATCCACGACAACCCAGCCTTAGAATATGCTTCCAAAGGGTCTGATTTTGTTTATCCAGTTTTTGTGATTGACCCGCATTACATGGAGCCAGATCC AAAAGCCTTCTCTCCAGGGTCAAGGCTCGCCGGTCTGAACCGGATCCGTTTCCTGCTAGAGAGCTTAGTAGATCTCGACACGAGTCTCAAGAAGCTGGGT TCGAGGCTGCTGATATTAAGAGGAGAGCCAGGTCAGGTTTTGACTCGGTGCTTGAAAGAATGGGGTGTGAAAAAGCTTTGCTTTGAGTATGACACTGATC CACATTATCAAGCTTTAGATATTAGAGTTAAGGAATATGCCTCTGCAGCAGGGATTGAAGTTTTTTCTCCTGTCAGTCATACACTTTTCAATCCAGCAGA TATCATACAAAGGAATGGAGGAAAGCCCCCACTGACTTACCAATCATTTCTAAAGCTCGCTGGACAACCTTCATGGGCATCATCCCCACTTTTAACCTCT ATTTCCTCACTTCCTCCAGTCGGAGATGTTGGAAGCTGTGAGATTTCAGAAGTTCCAACTATCAAAGACCTTGGTTATGGAGACATTGAACAGGAATGGA TTCCTTTCAGAGGAGGCGAATCAGAAGCACTGAAGAGGTTGAAAGAATCAATCAGTGATAAGGAGTGGGTAGCAAATTTTGAGAAACCCAAGGGCAATCC TTCTGCGTTTGTAAAACCTGCAACAACTGTGTTATCACCTTACTTAAAGTTCGGCTGTCTCTCTTCCAGGTATTTCTATCAGTGCCTTCAAGATGTCTAT AAAAACGTCCAGAAGCACACGTCACCACCTGTATCTCTTGCAGGCCAGTTGTTATGGAGAGATTTTTTCTACACTGTGGCTTTTGGCACTCCCAATTTTG ATCGGATGGAGGGCAATAAACTATGCAAGCAGATACCATGGAATGATGATGATGAATTGCTAGCAGCTTGGAGGGAAGCTAGAACAGGATACCCTTGGAT TGATGCCATCATGGTCCAGCTCCGCAAGTGGGGTTGGATGCACCATCTAGCACGGCATTCTGTTGCATGTTTTCTCACTCGTGGGGATCTGTTTCTTCAC TGGGAAAGAGGTCGTGATGTTTTTGAGAGACTTCTGATTGATTCAGATTGGGCAATAAATAATGGAAATTGGCTATGGCTATCGTGCTCATCCTTTTTTT ACCAGTATAACCGTATCTACTCACCAATATCATTTGGGAAGAAGTATGACCCAAATGGTGATTATATAAGACATTTTCTCCCTGTATTGAAAGATATGCC AAAGGAGTACATCTATGAGCCATGGACAGCTCCACCGGGCATTCAAAGAAAAGCAAAGTGCATAATAGGAAGAGATTATCCAAAACCAGTGGTGTATCAT GATTCTGCAAGCAAAGAGTGCAAGAGGAAGTTGGCAGAAGCTTATGCATTAAACAAAAAATTGAATGGCCAGCTGAGCCAAGAAGATTTAGATAATCTAA GGAGAAAATTGGAGCAAGATGAAGACCAAGAGCCAAAAATTAGAAGGCAAAGACAAAAAGTTGGTCACCTGACCTGA
AA sequence Show only first row Show all	>Potri.003G060000.5 pacid=42784652 polypeptide=Potri.003G060000.5.p locus=Potri.003G060000 ID=Potri.003G060000.5.v4.1 annot-version=v4.1 MQLSLCLSKPAQHLKNPLMAASGSGSIIWFRKGLRIHDNPALEYASKGSDFVYPVFVIDPHYMEPDPKAFSPGSRLAGLNRIRFLLESLVDLDTSLKKLG SRLLILRGEPGQVLTRCLKEWGVKKLCFEYDTDPHYQALDIRVKEYASAAGIEVFSPVSHTLFNPADIIQRNGGKPPLTYQSFLKLAGQPSWASSPLLTS ISSLPPVGDVGSCEISEVPTIKDLGYGDIEQEWIPFRGGESEALKRLKESISDKEWVANFEKPKGNPSAFVKPATTVLSPYLKFGCLSSRYFYQCLQDVY KNVQKHTSPPVSLAGQLLWRDFFYTVAFGTPNFDRMEGNKLCKQIPWNDDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHSVACFLTRGDLFLH WERGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPISFGKKYDPNGDYIRHFLPVLKDMPKEYIYEPWTAPPGIQRKAKCIIGRDYPKPVVYH DSASKECKRKLAEAYALNKKLNGQLSQEDLDNLRRKLEQDEDQEPKIRRQRQKVGHLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15620		UVR3	UV REPAIR DEFECTIVE 3, DNA pho...		Potri.003G060000 [exp]	0	1
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Potri.002G078600 [exp]	3.46	0.9431	ACO1
AT2G36710			Pectin lyase-like superfamily ...		Potri.006G120100 [exp]	5.83	0.8603
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Potri.005G182700 [exp]	6.92	0.8878	ACO4
AT3G10180			P-loop containing nucleoside t...		Potri.006G040700 [exp]	7.93	0.9023
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.004G210600 [exp]	8.12	0.9148
AT1G32930			Galactosyltransferase family p...		Potri.001G450200 [exp]	8.24	0.9062
AT3G57220			Glycosyl transferase family 4 ...		Potri.006G045700 [exp]	10.00	0.9048
AT4G21310			Protein of unknown function (D...		Potri.011G031500 [exp]	11.22	0.8277
AT1G73965		CLE13	CLAVATA3/ESR-RELATED 13 (.1)		Potri.008G115600 [exp]	12.84	0.8930	CLE12.2
AT4G13030			P-loop containing nucleoside t...		Potri.002G199700 [exp]	13.03	0.7540

Compare expression of checked genes

Potri.003G060000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.