Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80230 167 / 2e-53 Rubredoxin-like superfamily protein (.1) AT3G15640 159 / 3e-50 Rubredoxin-like superfamily protein (.1.2) AT1G52710 101 / 2e-28 Rubredoxin-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G173800 [exp] 192 / 1e-63 AT1G80230 162 / 2e-51 Rubredoxin-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035917 [exp] 153 / 8e-48 AT1G80230 187 / 2e-61 Rubredoxin-like superfamily protein (.1) Lus10011494 [exp] 129 / 2e-39 AT1G80230 148 / 5e-47 Rubredoxin-like superfamily protein (.1) Lus10025745 [exp] 124 / 1e-36 AT1G80230 161 / 3e-51 Rubredoxin-like superfamily protein (.1) Lus10023135 [exp] 57 / 4e-11 AT1G80230 90 / 9e-24 Rubredoxin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0045 [poplar] [flax] Rubredoxin PF01215 [poplar] [flax] COX5B Cytochrome c oxidase subunit Vb
Representative CDS sequence Show only first row Show all	>Potri.003G060100.5 pacid=42785183 polypeptide=Potri.003G060100.5.p locus=Potri.003G060100 ID=Potri.003G060100.5.v4.1 annot-version=v4.1 ATGTGGAGAAGACTAGCCTCTTCACACCTCAAAACCCTAGCCACCGCCTCCGCCTCCGCCTCCGTCCGATCCACTCAATTCCTGCTCCTTAACCGATCTC CTTCCGCTTCTGTCTTCAATCGCTATCTCAGCGCCGCTTCAGTGGATGGTGCAGTAAAGAAGAGGGTTGAGGATGTAATGCCTATTGCTACTGGGCATGA GCGGGAGGAGCTTGAAGCTGAGCTTGAGGGAAAGAAACTTCTTGATATAGACTTTCCTGAAGGCCCTTTTGGCACAAAGGAAGAGCCTTCTGTTATCAAG TCCTACTATGACAAGAGAATAGTTGGATGCCCTGGAGGTGAAGGAGAGGATGAACATGATGTTGTGTGGTTTTGGCTGGAGAAAGGCAAGCCTCATGAAT GCCCAGTGTGCACACAGCACTTTGCGCTTGAAGTTGTGGGCCCTGGAGGACCACCCGATGGACATGGCGATGATGATGATCATCATCACTAG
AA sequence Show only first row Show all	>Potri.003G060100.5 pacid=42785183 polypeptide=Potri.003G060100.5.p locus=Potri.003G060100 ID=Potri.003G060100.5.v4.1 annot-version=v4.1 MWRRLASSHLKTLATASASASVRSTQFLLLNRSPSASVFNRYLSAASVDGAVKKRVEDVMPIATGHEREELEAELEGKKLLDIDFPEGPFGTKEEPSVIK SYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCTQHFALEVVGPGGPPDGHGDDDDHHH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80230			Rubredoxin-like superfamily pr...		Potri.003G060100 [exp]	0	1
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Potri.006G140400 [exp]	7.00	0.8927
AT3G53020		RPL24B, STV1	SHORT VALVE1, Ribosomal protei...		Potri.004G085300 [exp]	8.71	0.9119	RPL24.1
AT3G53740			Ribosomal protein L36e family ...		Potri.015G145800 [exp]	12.36	0.9035
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.002G119600 [exp]	15.68	0.8968
AT2G27710			60S acidic ribosomal protein f...		Potri.009G146200 [exp]	16.55	0.9035
AT3G52590		HAP4, ERD16, UB...	HAPLESS 4, EARLY-RESPONSIVE TO...		Potri.015G007100 [exp]	18.16	0.9006	UBQ1.4
AT1G80230			Rubredoxin-like superfamily pr...		Potri.001G173800 [exp]	20.88	0.7865
AT5G57290			60S acidic ribosomal protein f...		Potri.003G010200 [exp]	21.42	0.8898
AT2G27710			60S acidic ribosomal protein f...		Potri.004G185800 [exp]	23.23	0.9009
AT5G27700			Ribosomal protein S21e (.1)		Potri.013G017600 [exp]	31.52	0.8836

Compare expression of checked genes

Potri.003G060100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.