Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15440 1349 / 0 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT1G10580 96 / 3e-20 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 92 / 8e-20 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 95 / 1e-19 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 94 / 3e-19 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G02730 89 / 1e-18 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 89 / 5e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 87 / 5e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 89 / 7e-18 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT5G23430 89 / 8e-18 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G173500 [exp] 1687 / 0 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.002G051900 [exp] 104 / 3e-24 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G172800 [exp] 97 / 2e-20 AT1G10580 874 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G064600 [exp] 96 / 4e-20 AT1G10580 906 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 91 / 1e-19 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 92 / 7e-19 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 89 / 8e-19 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G144400 [exp] 91 / 9e-19 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.008G002300 [exp] 92 / 1e-18 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034114 [exp] 1445 / 0 AT1G15440 1318 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10043473 [exp] 1143 / 0 AT1G15440 1058 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10014674 [exp] 98 / 6e-22 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10030869 [exp] 99 / 4e-21 AT1G10580 939 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10030620 [exp] 98 / 7e-21 AT1G10580 926 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 95 / 1e-20 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 92 / 1e-19 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 93 / 2e-19 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10041007 [exp] 93 / 4e-19 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003487 [exp] 89 / 5e-19 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF04003 [poplar] [flax] Utp12 Dip2/Utp12 Family
Representative CDS sequence Show only first row Show all	>Potri.003G060500.1 pacid=42784995 polypeptide=Potri.003G060500.1.p locus=Potri.003G060500 ID=Potri.003G060500.1.v4.1 annot-version=v4.1 ATGAATTACAGATTCCAAAACTTGCTTGGAGCTCCCTACAGAGGAGGCAACGTTGTAATTACTCAAAACACCCAACTAATCTCACCAGTCGGCAACCGAG TCTCTATCACCGACCTCATCAAATCCCAAACCATAACCCTCCCACTCCAATCCTCCTCCAACATCCGCCGCATTGCCGCCTCCCCCGACGGAACTTTCCT CCTTACTGTCGACGAGAACCACCGCTGCCACTTCATCAATACCGCCCGCCGCGTCATCCTCCACCGCATTAACTTCAAGAATACAGTGAATGCCGTCAAA TTCAGCCCCGATGGTAAATTTATCGCGGTTGCAGCGGGAAAATTGGTCCAACTCTGGCGGTCTCCGGGGTTCAAGAAAGATTTTTTCGCTTTCGAGTTAG TTAGGACCATAGCTGATTGCGAGGATACAGTTACAGCAATTGATTGGAGCTTAGACTGTAAGTATTTGCTTGTTGGCTCGAAGGACTTATCGGCACGCCT CTTTTGTGTTGAGAAATTGAAAGACGGGATTTTGAATAAGCCCTTTTTGTTTTTAGGACATAGAGATAATGTAGTTGGTTGTTTCTTTGGTTATGATAAG AAAAATACTAATAAGGTTAGTAAGGTTTATACAATTACGCGTGATTGTTATATTTTTAGCTGGGGTTATAGTGGTAATAATGACGGTAATTTTGATGAAA ATGATGGGGGGATTTCAGAGCCGGCCTTCCCGGGGACGCCGGAGAGGGATGGGGAAGGGAATATGGATAGTGGAAGCGTGGGTACTGTTAAGAAAAGGAA GGATTTTGATGGGAAAGATGAGGGGTATTTGCACAAAGAGAAGTGGGAGCTGTTAAGGAAAGATGGGTTTATGCAATCACCGGCGAAGTTAACTGCATGT GATTACCATAGGGGGCTTGATATGGTGGTGGTGGGGTTTTCTAATGGTGTTTTTGGGTTATATCAAATGCCTGATTTTGTTTGCATGCATTTGTTGTCGA TTTCGAGGGAGAAGATAACTGCTGCAGTTTTCAATGAGATTGGGAATTGGTTGACATTTGGTTGTGCAAAGTTGGGGCAGTTGCTTGTGTGGGAATGGCG GTCAGAGAGTTATGTGTTGAAGCAACAAGGGCATTACTTTGACGTGAATTGCTTGACTTACTCTCCAGATTCACAATTGCTGGCTACTGGTGCAGATGAT AACAAAGTAAAGGTGTGGACCGTTTCATCTGGCTTTTGCTTTGTAACATTCTCAGAGCACACAAATGCTGTGACCGCGCTTCATTTTATGGCAAACAACC ATTGTCTTTTAAGTGCATCTCTTGATGGAACTGTACGTGCATGGGATTTGTTCCGTTATCGAAATTTTAGGACATTTACCACCCCTTCTTCAAGGCAGTT TGTCTCTTTGGCAGCAGACCAAAGTGGGGAAGTCATTTGTGCTGGAACTCTAGATTCATTTGAGATATTTGTTTGGTCAATGAAGACAGGCCGTTTATTG GATGTCCTTAGTGGTCATGCAGGTCCTGTTCATGGGCTGACATTTTCTCCCTCAAATGCAGTCTTAGCTTCATCATCATGGGACAAAACTGTTCGCCTGT GGGATGTTTTTGAAGGAAAAGGTGCCGTTGAAACGTTTCCTCACACACATGATGTTCTTACTGTAGTTTACCGTCCAGATGGACGGCAATTAGCTTGCAG CACATTAGATGGGCAGATTCATTTCTGGGACACAATTGATGGCTTGTTAATGTACACAATCGAGGGCCGCAGGGATATTGCTGGAGGGCGTCTCATGACT GATCGTAGATCAGCAGCAAACTCAACTGCAGGAAAGTGCTTCACAACCTTGTGCTATTCTGCTGATGGGAGTTACATTTTAGCTGGTGGAAGTAGCAAGT TCATCTGTATGTACGATGTTGCTGATCAGGTTCTGCTGCGTCGCTTCCAAATAACTCACAATCTTTCATTAGATGGAGTGCTGGATTTCTTGAACTCGAA GAAGATGACAGATGCAGGTCCACTTGATTTAATCGATGATGATGACTCTGATGCTGAAGAGGGTGTTGATAAACAAACTCGAGGAAAGTTGGGATATGAT TTACCAGGATCCATGCCCAATCGTGGAAGGCCTATTATTAGAACAAAATGTCTGAGAATTGCACCTACCGGGCGAAGCTTTGCAGCGGCAACTACAGAGG GGGTTCTAGTTTATTCCATTGATGAATCCTTCATCTTTGATCCCACTGATCTAGACATGGATGTTACACCAGAGGCAGTTGAAGAAGCATTAGATGAAGA TCAACCAAACAGAGCTTTAATTATCAGCCTTCGCCTGAACGAGGATTCTCTAATTAAAAAATGCATTTTTTCTGTCAGTCCATTGGATATACCAGCTATT GCCTCCTCAGTCCCATACAGATATCTGCAAAGATTAATAGAAGCATTTTCTGATCTTTTGGAAAGCTGTCCGCACTTGGAGTTTATACTCCGCTGGTGTC AGGAGCTGTGCAAAGCTCATGGAAATTCAATTCAACAAAATTCCAGAAATCTTCTTCCCGCATTAAAATCCTTGCAGAAAGCAATTACTAGAATACATCA GGATTTGGCAGATACTTGTTCGTCTAATGAATACATGTTACGATATTTATGCTCAAGCAACAACAAATGA
AA sequence Show only first row Show all	>Potri.003G060500.1 pacid=42784995 polypeptide=Potri.003G060500.1.p locus=Potri.003G060500 ID=Potri.003G060500.1.v4.1 annot-version=v4.1 MNYRFQNLLGAPYRGGNVVITQNTQLISPVGNRVSITDLIKSQTITLPLQSSSNIRRIAASPDGTFLLTVDENHRCHFINTARRVILHRINFKNTVNAVK FSPDGKFIAVAAGKLVQLWRSPGFKKDFFAFELVRTIADCEDTVTAIDWSLDCKYLLVGSKDLSARLFCVEKLKDGILNKPFLFLGHRDNVVGCFFGYDK KNTNKVSKVYTITRDCYIFSWGYSGNNDGNFDENDGGISEPAFPGTPERDGEGNMDSGSVGTVKKRKDFDGKDEGYLHKEKWELLRKDGFMQSPAKLTAC DYHRGLDMVVVGFSNGVFGLYQMPDFVCMHLLSISREKITAAVFNEIGNWLTFGCAKLGQLLVWEWRSESYVLKQQGHYFDVNCLTYSPDSQLLATGADD NKVKVWTVSSGFCFVTFSEHTNAVTALHFMANNHCLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLAADQSGEVICAGTLDSFEIFVWSMKTGRLL DVLSGHAGPVHGLTFSPSNAVLASSSWDKTVRLWDVFEGKGAVETFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDTIDGLLMYTIEGRRDIAGGRLMT DRRSAANSTAGKCFTTLCYSADGSYILAGGSSKFICMYDVADQVLLRRFQITHNLSLDGVLDFLNSKKMTDAGPLDLIDDDDSDAEEGVDKQTRGKLGYD LPGSMPNRGRPIIRTKCLRIAPTGRSFAAATTEGVLVYSIDESFIFDPTDLDMDVTPEAVEEALDEDQPNRALIISLRLNEDSLIKKCIFSVSPLDIPAI ASSVPYRYLQRLIEAFSDLLESCPHLEFILRWCQELCKAHGNSIQQNSRNLLPALKSLQKAITRIHQDLADTCSSNEYMLRYLCSSNNK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Potri.003G060500 [exp]	0	1
AT4G31520			SDA1 family protein (.1)		Potri.008G182900 [exp]	2.44	0.9088
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Potri.006G055300 [exp]	2.82	0.8991
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Potri.003G073000 [exp]	3.87	0.8828
AT1G75200			flavodoxin family protein / ra...		Potri.002G260700 [exp]	5.65	0.8721
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Potri.002G213500 [exp]	5.83	0.8504
AT1G79150			binding (.1)		Potri.005G096900 [exp]	7.07	0.8769
AT4G16630			DEA(D/H)-box RNA helicase fami...		Potri.005G241300 [exp]	7.93	0.8723
AT2G44270		ROL5	repressor of lrx1 (.1.2)		Potri.005G083500 [exp]	8.12	0.8449
AT2G18220			Noc2p family (.1)		Potri.001G012800 [exp]	8.48	0.8770
AT1G31660			unknown protein		Potri.011G112500 [exp]	9.16	0.8734

Compare expression of checked genes

Potri.003G060500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.