Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25910 188 / 2e-55 Protein of unknown function (DUF1644) (.1) AT1G68140 160 / 1e-45 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT3G24740 158 / 3e-44 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT4G08460 150 / 7e-42 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT4G31410 150 / 1e-41 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G77770 140 / 2e-38 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G15430 139 / 4e-38 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G80220 133 / 6e-36 Protein of unknown function (DUF1644) (.1) AT2G26050 101 / 1e-24 Protein of unknown function (DUF1644) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G173400 [exp] 289 / 4e-95 AT3G25910 109 / 3e-27 Protein of unknown function (DUF1644) (.1) Potri.018G070500 [exp] 207 / 4e-63 AT3G25910 246 / 2e-79 Protein of unknown function (DUF1644) (.1) Potri.006G154300 [exp] 201 / 2e-60 AT3G25910 152 / 8e-43 Protein of unknown function (DUF1644) (.1) Potri.002G088700 [exp] 170 / 7e-49 AT4G08460 245 / 2e-80 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.003G021800 [exp] 166 / 3e-47 AT1G68140 315 / 2e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.001G208800 [exp] 163 / 2e-46 AT1G68140 312 / 6e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.005G172300 [exp] 162 / 5e-46 AT4G08460 219 / 2e-70 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.018G006400 [exp] 158 / 1e-44 AT4G31410 331 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.006G275400 [exp] 157 / 2e-44 AT4G31410 311 / 4e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043292 [exp] 203 / 2e-61 AT3G25910 282 / 2e-93 Protein of unknown function (DUF1644) (.1) Lus10019436 [exp] 200 / 4e-60 AT3G25910 277 / 3e-91 Protein of unknown function (DUF1644) (.1) Lus10026800 [exp] 167 / 2e-48 AT3G25910 149 / 1e-42 Protein of unknown function (DUF1644) (.1) Lus10020957 [exp] 167 / 8e-48 AT1G68140 309 / 1e-104 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10004940 [exp] 167 / 1e-47 AT1G68140 319 / 4e-108 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10022809 [exp] 167 / 2e-47 AT3G24740 351 / 1e-120 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10025356 [exp] 163 / 2e-47 AT1G68140 282 / 3e-95 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10020151 [exp] 163 / 1e-46 AT4G31410 363 / 1e-126 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10026950 [exp] 163 / 2e-46 AT4G31410 363 / 2e-126 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10011876 [exp] 166 / 3e-46 AT3G24740 358 / 5e-122 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF07800 [poplar] [flax] DUF1644 Protein of unknown function (DUF1644)
Representative CDS sequence Show only first row Show all	>Potri.003G060800.3 pacid=42785036 polypeptide=Potri.003G060800.3.p locus=Potri.003G060800 ID=Potri.003G060800.3.v4.1 annot-version=v4.1 ATGCCAAGGGATAGAAGAGTCCATCGCTTGTCTTCTGATCGGTCTAGATCGTCGCCTTACCCTAGGAGTTCAAAAAATTCTGAGCAATTCAAAACCCAAA GCTCATTGGGGTCGGATGAGAATATCCAAAAATGGGGGAATGTCAGGTGCCCCGTCTCTGTGGACCATCCACGCGATAAAGGTGACGATCCCGAGAGGTC ATTGCGATCGACCAAAGATGTCAAAGAATGGGAAGAAATTAGGTGCCCCATTTGCATGGAACATCCCCACAATGCTGTTCTCTTACAATGTTCTTCCTTT GGCAAAGGCTGCCGGCCTCACATGTGCAATACTAGCTATCGCCACTCAAATTGCCTTGACCAATTCCGCAAGTCTAATGTGTCATCTCCATCCGTGGAAA TTTTGCATGAAATTCCTTCTGTTTCCAATAGAACAGGGGGAGAATTGCAATTGCTTGGGCAAACTGGGCATAAAGAGAGTGAGCCGCAGCCTAAGCTTTG GTGCCCTCTGTGTCGAGGACAAATCTATGGATGGACTGTTGTAAAGCCTGCACGAGAATTCATGAATTCCAAGGTACGGAGTTGTTCTTGGGAGACTTGT GATTTTAGTGGGAGTTATTCAGAACTTAGAAAGCACGCAAGGTCTGACCATCCTTTCATCCGCCCATCAGAGGTGGACATCCAACGACAACATGACTGGG CCAACTTTGAGTATGAAAGAGATGTCGCGGACATTGTTGCTACGCTCGGTTTAACAAGAGAGGAACAAGAGGAGCTTGGTAGAGATTTTGACGACCTCCC TGCTATGGTCAGCCCAAATGAAGAAGAAGATGAGGAGAATGAAGACAGGAATAGAGGAGATTCTTATCGGGTTAGGAGAACTTCAAACCGAAATGACCGT CCTGTTGTACTCCTCCGTTTTGAACTTGAGATGTCGCCAGAAGACCATGATATGGAGACTAGCCATAACAGTAGACAAACCAACAATTTCAGATGGAACA GAAACATGTCACCGGTACCAGCACGCTATGAAAGGGGGGCTAGTTATGCTAATAGACGAACCAACAACAATTTTAGACGGAACAACAGTTCTAGGAGTAA TAATATTCCAGAGAGGATGCTGCATGGTCTGAACAGCCATAGTTATCCCAACAGACGAACCAACAATACTAGATGGAACAACAGTTCTAGGAATAACGAT CCAGAGCGGATGCGACATGGTCTAAATAGCTATAGGCAGAATGATGGTTTCAGTAGAAATGGTAACTTTAGAGGGAACGGTAATTTTTGGAGTAATCGCA CGGAGAGAAACGAGCGCAGGCGGAGTGACAGTTTCAGGCGCAGACCGTCAGAGAGGACGCCCTGA
AA sequence Show only first row Show all	>Potri.003G060800.3 pacid=42785036 polypeptide=Potri.003G060800.3.p locus=Potri.003G060800 ID=Potri.003G060800.3.v4.1 annot-version=v4.1 MPRDRRVHRLSSDRSRSSPYPRSSKNSEQFKTQSSLGSDENIQKWGNVRCPVSVDHPRDKGDDPERSLRSTKDVKEWEEIRCPICMEHPHNAVLLQCSSF GKGCRPHMCNTSYRHSNCLDQFRKSNVSSPSVEILHEIPSVSNRTGGELQLLGQTGHKESEPQPKLWCPLCRGQIYGWTVVKPAREFMNSKVRSCSWETC DFSGSYSELRKHARSDHPFIRPSEVDIQRQHDWANFEYERDVADIVATLGLTREEQEELGRDFDDLPAMVSPNEEEDEENEDRNRGDSYRVRRTSNRNDR PVVLLRFELEMSPEDHDMETSHNSRQTNNFRWNRNMSPVPARYERGASYANRRTNNNFRRNNSSRSNNIPERMLHGLNSHSYPNRRTNNTRWNNSSRNND PERMRHGLNSYRQNDGFSRNGNFRGNGNFWSNRTERNERRRSDSFRRRPSERTP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25910			Protein of unknown function (D...		Potri.003G060800 [exp]	0	1
AT1G03220			Eukaryotic aspartyl protease f...		Potri.006G068900 [exp]	2.82	0.9527
					Potri.008G206866 [exp]	7.34	0.9339
					Potri.013G116750 [exp]	8.12	0.9236
AT1G09820			Pentatricopeptide repeat (PPR-...		Potri.005G014500 [exp]	8.48	0.8947
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.006G049000 [exp]	10.95	0.8916
					Potri.009G016766 [exp]	11.95	0.9104
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Potri.004G208800 [exp]	13.82	0.7717	Pt-ATCSLD4.2
					Potri.005G123402 [exp]	14.28	0.8955
AT5G15700			DNA/RNA polymerases superfamil...		Potri.004G111600 [exp]	18.24	0.8616
AT3G56030			Tetratricopeptide repeat (TPR)...		Potri.008G141700 [exp]	18.54	0.8435

Compare expression of checked genes

Potri.003G060800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.