Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15420 163 / 5e-48 unknown protein AT4G05050 96 / 1e-23 UBQ11 ubiquitin 11 (.1.2.3.4) AT1G31340 95 / 2e-23 NEDD8, ATRUB1, RUB1 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) AT2G35635 95 / 2e-23 UBQ7, RUB2 RELATED TO UBIQUITIN 2, ubiquitin 7 (.1) AT2G36170 94 / 2e-23 Ubiquitin supergroup;Ribosomal protein L40e (.1) AT3G52590 94 / 2e-23 HAP4, ERD16, UBQ1, EMB2167 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) AT2G47110 94 / 4e-23 UBQ6 ubiquitin 6 (.1.2) AT3G62250 94 / 4e-23 UBQ5 ubiquitin 5 (.1) AT1G23410 94 / 5e-23 Ribosomal protein S27a / Ubiquitin family protein (.1) AT4G02890 96 / 8e-23 UBQ14 Ubiquitin family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G173300 [exp] 428 / 2e-150 AT1G15420 164 / 2e-48 unknown protein Potri.016G077000 [exp] 95 / 3e-24 AT3G52590 194 / 1e-65 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.002G062500 [exp] 95 / 2e-23 AT1G31340 296 / 9e-105 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) Potri.016G077200 [exp] 94 / 2e-23 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.012G024300 [exp] 94 / 2e-23 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.015G007100 [exp] 94 / 2e-23 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.014G115100 [exp] 94 / 4e-23 AT2G47110 255 / 2e-88 ubiquitin 6 (.1.2) Potri.015G111500 [exp] 94 / 4e-23 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Potri.002G190000 [exp] 94 / 4e-23 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030351 [exp] 186 / 9e-57 AT1G15420 187 / 1e-58 unknown protein Lus10007894 [exp] 184 / 2e-56 AT1G15420 189 / 4e-59 unknown protein Lus10008873 [exp] 94 / 2e-23 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10030894 [exp] 94 / 5e-23 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030595 [exp] 94 / 5e-23 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10018367 [exp] 96 / 1e-22 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6) Lus10020907 [exp] 56 / 2e-08 AT5G11240 650 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10033468 [exp] 56 / 2e-08 AT5G11240 628 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family CL0072 [poplar] [flax] PF04003 [poplar] [flax] Utp12 Dip2/Utp12 Family
Representative CDS sequence Show only first row Show all	>Potri.003G060900.4 pacid=42786061 polypeptide=Potri.003G060900.4.p locus=Potri.003G060900 ID=Potri.003G060900.4.v4.1 annot-version=v4.1 ATGCAGATTTTGGTGAAAATGGTAACAGGAAAGACCCTAACACTGGGGATGGAGTCTTCAGACACCGTGGACTGTGTAAAGGCCAAAATCAAAGATGAGG AAGACATCCCACCAGACCAGCAATGCCTAATCTTTGCAGGAAAACAGCTGGAAGATGGCCAAATCCTTGCTGACTTCAGCATCCACAAGAAGAAGAAAAC AAAGCCCCTCAAGTTTACTCTGCTCCAGGTTGATGATGTTGCTGCTGCACCAAAACAGTTAGATGTCCAAAATGTAGAATCAGAAGCAGCAGTTGCCTCG ACTAAAGCTAAAAAATCAAAGAAGAAGAAACGTGCTGCGTCTGATGTGGGAGACACAATTGATACTGATCATGGTGCAGCTACTGATGGAGTCCTTGTTG AGTATGATGTCAATGAGCCGACCATGGGTGAAAAACTTGCTAGTATAACTCTACAAGATAATGGCAAAACCAACAGCCTTGAGATAGAAGAATCACCTCC TCATGCAAAGCCTCCAAGTGCTGACTCTGTTAACATTCTTCTTAAGCAAGCATTGCGTGCTGATGATCGTGCTCTTCTATTAGATTGCTTATACACCCAA GATGAGAAGGTTATTGCAAATTCAATCTCACTGCTCAATCCATCTGATGTGCTCAAGCTCTTACAGTCTCTTCTATCCATAATTCACTCCAGGGGTGCAA TCTTGGCGTGTGCTCTTCCTTGGCTAAGAAGTTTACTTCTTCAACATTCAACTGGAATAATGTCTCAGGAATCTTCTTTACATGCTTTGAATTCCTTATA TCAGCTCATTGAATCCCGAGTGTCAACTTTCCAGTCAGCTCTTCAATTGTCAAGTTGCATAGACTTTCTCTACGCTGGGGTTGTTGATGATGCATCAGAT GAAAATCACACAGTAACTCCTGTAATTTACGAGGACAATGATGAAAGTGATGACAAGGAATCTGAAGATGCCATGGAAACTGATCAAGACAGCAAAGAGG AGGAAGCGTCTGATGGACTTAGTGATATTGAAGGAATTGATGGCATGAGTGAGTGA
AA sequence Show only first row Show all	>Potri.003G060900.4 pacid=42786061 polypeptide=Potri.003G060900.4.p locus=Potri.003G060900 ID=Potri.003G060900.4.v4.1 annot-version=v4.1 MQILVKMVTGKTLTLGMESSDTVDCVKAKIKDEEDIPPDQQCLIFAGKQLEDGQILADFSIHKKKKTKPLKFTLLQVDDVAAAPKQLDVQNVESEAAVAS TKAKKSKKKKRAASDVGDTIDTDHGAATDGVLVEYDVNEPTMGEKLASITLQDNGKTNSLEIEESPPHAKPPSADSVNILLKQALRADDRALLLDCLYTQ DEKVIANSISLLNPSDVLKLLQSLLSIIHSRGAILACALPWLRSLLLQHSTGIMSQESSLHALNSLYQLIESRVSTFQSALQLSSCIDFLYAGVVDDASD ENHTVTPVIYEDNDESDDKESEDAMETDQDSKEEEASDGLSDIEGIDGMSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15420			unknown protein		Potri.003G060900 [exp]	0	1
AT2G27510		ATFD3	ferredoxin 3 (.1)		Potri.009G163800 [exp]	4.58	0.6316
AT5G66540			unknown protein		Potri.015G078500 [exp]	7.21	0.6565
AT2G31410			unknown protein		Potri.014G145600 [exp]	9.05	0.6558
AT1G47970			unknown protein		Potri.010G148400 [exp]	12.64	0.5987
AT5G59460			scarecrow-like transcription f...		Potri.009G033400 [exp]	17.20	0.5469
AT3G59660			C2 domain-containing protein /...		Potri.013G127000 [exp]	18.16	0.5881
					Potri.001G137000 [exp]	21.35	0.6157
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Potri.010G012800 [exp]	23.83	0.6181	PRL1.1
AT2G38450			unknown protein		Potri.010G182400 [exp]	31.62	0.6039
AT2G34750			RNA polymerase I specific tran...		Potri.005G098500 [exp]	37.41	0.6157

Compare expression of checked genes

Potri.003G060900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.