Plant FIBer expression Database

Potri.003G061000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G061200
[exp]
78 / 4e-21 AT1G51920 / unknown protein
Potri.001G172850
[exp]
69 / 3e-17 AT1G51920 / unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G061000.1 pacid=42785615 polypeptide=Potri.003G061000.1.p locus=Potri.003G061000 ID=Potri.003G061000.1.v4.1 annot-version=v4.1
ATGACAGGTAACTCTCTGAAGTCTATTATGGTGACCCTCTTCATCTTTGCTATGGTACTGTCTCCGATACTGCCATCTGCTGAAGCAGGCCGTTTGAATT
ATCGAGGTCTCCAATCTGGACCAATATGTCCAACTTGTGTATGCTGCTCACCTCCACCTCCAGGGTCCTGCTGCCCATGTTGTTCTACTCCTATAGAACC
CTGA
AA sequence
>Potri.003G061000.1 pacid=42785615 polypeptide=Potri.003G061000.1.p locus=Potri.003G061000 ID=Potri.003G061000.1.v4.1 annot-version=v4.1
MTGNSLKSIMVTLFIFAMVLSPILPSAEAGRLNYRGLQSGPICPTCVCCSPPPPGSCCPCCSTPIEP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G51920 unknown protein Potri.003G061000
[exp]
0 1
AT1G24020 MLP423 MLP-like protein 423 (.1.2) Potri.008G212100
[exp]
4.47 0.9698
AT2G32210 unknown protein Potri.001G439800
[exp]
10.00 0.9602
AT5G54160 ATOMT1 O-methyltransferase 1 (.1) Potri.001G451100
[exp]
10.48 0.9636 Pt-RCOMT1.5
AT1G24020 MLP423 MLP-like protein 423 (.1.2) Potri.008G213100
[exp]
14.28 0.9681
AT2G26560 PLP2, PLAIIA, P... PATATIN-LIKE PROTEIN 2, phosph... Potri.017G133951
[exp]
17.14 0.9620
AT2G23570 ATMES19 ARABIDOPSIS THALIANA METHYL ES... Potri.007G037401
[exp]
19.59 0.9458
AT2G26560 PLP2, PLAIIA, P... PATATIN-LIKE PROTEIN 2, phosph... Potri.017G134001
[exp]
22.97 0.9538
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.003G099000
[exp]
23.91 0.9672
AT1G73260 ATKTI1 ARABIDOPSIS THALIANA KUNITZ TR... Potri.007G111600
[exp]
24.49 0.9524
AT4G27740 Yippee family putative zinc-bi... Potri.012G019200
[exp]
26.53 0.9362

Potri.003G061000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.