Plant FIBer expression Database

Potri.003G061200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G061000
[exp]
79 / 2e-21 AT1G51920 / unknown protein
Potri.001G172850
[exp]
75 / 1e-19 AT1G51920 / unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G061200.1 pacid=42785342 polypeptide=Potri.003G061200.1.p locus=Potri.003G061200 ID=Potri.003G061200.1.v4.1 annot-version=v4.1
ATGACAGGTAACTCTCTGAAGTCTATTTTGGTGACCCTCTTCATCTTTGCTATGGTACTGTCTCCGATACTGCCATCAGCTGAAGCAGGCCGTTTGAATC
ATCGAGGTCTCCAGTCTGGACGGCCAATATGTCCAGCTTGTGTATGCTGCTCACCTCCACCTCCAGGGTCCTGCTGCCCATGTTGTTCTACTCCTATTGA
AACTGAATCTACAACTGGGTCTCCATGA
AA sequence
>Potri.003G061200.1 pacid=42785342 polypeptide=Potri.003G061200.1.p locus=Potri.003G061200 ID=Potri.003G061200.1.v4.1 annot-version=v4.1
MTGNSLKSILVTLFIFAMVLSPILPSAEAGRLNHRGLQSGRPICPACVCCSPPPPGSCCPCCSTPIETESTTGSP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G51920 unknown protein Potri.003G061200
[exp]
0 1
AT2G29420 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, ... Potri.016G023340
[exp]
5.29 0.9038
AT3G09270 ATGSTU8 glutathione S-transferase TAU ... Potri.016G023200
[exp]
6.92 0.9017
AT4G35160 O-methyltransferase family pro... Potri.009G139700
[exp]
12.24 0.8701
AT4G01575 serine protease inhibitor, Kaz... Potri.014G108800
[exp]
12.44 0.8731
AT2G19800 MIOX2 myo-inositol oxygenase 2 (.1) Potri.017G100200
[exp]
24.37 0.8573
AT1G72680 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE... Potri.016G023360
[exp]
26.83 0.8604
AT1G17020 ATSRG1, SRG1 senescence-related gene 1 (.1) Potri.009G022800
[exp]
31.43 0.8754
AT5G49330 MYB PFG3, ATMYB111 PRODUCTION OF FLAVONOL GLYCOSI... Potri.003G144200
[exp]
38.45 0.8467
AT1G02170 AtMCP1b, ATMC1,... LSD ONE LIKE 3, ARABIDOPSIS TH... Potri.017G053100
[exp]
40.47 0.8265
AT4G15920 SWEET17, AtSWEE... Nodulin MtN3 family protein (.... Potri.013G014500
[exp]
43.86 0.8544

Potri.003G061200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.