Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15690 244 / 6e-80 Single hybrid motif superfamily protein (.1.2) AT1G52670 240 / 2e-78 Single hybrid motif superfamily protein (.1) AT3G56130 128 / 8e-35 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) AT5G16390 49 / 1e-06 CAC1-A, BCCP-1, CAC1A, BCCP1, CAC1 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2) AT5G15530 48 / 3e-06 BCCP2, CAC1-B biotin carboxyl carrier protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G172600 [exp] 405 / 1e-143 AT3G15690 249 / 9e-83 Single hybrid motif superfamily protein (.1.2) Potri.008G074100 [exp] 135 / 5e-38 AT3G56130 229 / 1e-74 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Potri.010G183200 [exp] 129 / 2e-35 AT3G56130 222 / 6e-72 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Potri.017G092500 [exp] 47 / 7e-06 AT5G16390 191 / 1e-59 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2) Potri.019G054400 [exp] 44 / 6e-05 AT5G16390 117 / 5e-31 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2) Potri.004G119000 [exp] 44 / 8e-05 AT5G15530 173 / 7e-53 biotin carboxyl carrier protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011480 [exp] 224 / 2e-72 AT1G52670 189 / 3e-59 Single hybrid motif superfamily protein (.1) Lus10023118 [exp] 218 / 8e-70 AT3G15690 192 / 2e-60 Single hybrid motif superfamily protein (.1.2) Lus10040959 [exp] 121 / 2e-31 AT3G56130 238 / 6e-77 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10009843 [exp] 119 / 2e-31 AT3G56130 242 / 1e-79 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10010226 [exp] 117 / 5e-31 AT3G56130 238 / 4e-78 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10017424 [exp] 117 / 6e-31 AT3G56130 240 / 4e-79 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10020619 [exp] 45 / 5e-05 AT5G16390 204 / 9e-65 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2) Lus10004868 [exp] 43 / 0.0002 AT5G16390 212 / 2e-67 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G061400.6 pacid=42785935 polypeptide=Potri.003G061400.6.p locus=Potri.003G061400 ID=Potri.003G061400.6.v4.1 annot-version=v4.1 ATGGATACGTCTCAAGTTATTGTAATGTGTGTTCTGTTAAATTTTCTTTTCTTTTTCTTTATGGGGCAGTTTAATTTTCTGGGGCTTGTTTCTTTGCTCC TTGTTTCCAATACAGTTTTGAGTTTGAAGGAATTCAAAGATTGTTGTGAGTTTGATAGCTTAGGAGCTTTAAATGTTAAACTCTCAAAGTTGGATTTTGG TGGAGGAAAGTTTGGTAATCTGCAGCAACGAAGTGGCGTAAGAGTGTGGATGGGTAGGGTACAACTGCAATATGCTGGTGTGGCTATATCACATAAATCA AGAAAAGCTTTCAGGTGTTGTGGCTCGGCTTCTGAAGCTGAGTGGACTACAAAAGAGACCACATCATTGGGTTTGACAAGCCAACTTATTCCAAATTCAT CTGAGATTGAATCTTTGGTCACTGAAATATGCAATACAACTTCAATAGCCGAGTTTGAATTGAAACTTGGTGGGTTTCGGCTATATGTGATGAGGGATTT AACTGAGAAAAATGAACCTACACCTCAACCCCTGCCTCCTCCTCCTCTTGCTGTCACTGTGAAAACTACTACTGATGCATCTGATCTCAATGGGTCAGCT TCTACATCTTTAGCCATCTCCAAACAAGAGCCTTCTTTTGGGGGGATTAAATCATTTCTTGATAGAACTACTGATGAAGGCTTAATGATACTGCCGTCTC CAAGGGTGGGGTTTTTCCGGAGATCTCGAACTATAAAGGGAAAACGTGCTCCCCCATCATGTAAAGAGAAGCAAATAATAAAGGAGGGTCAAGTGCTATG CTACATTGAACAACTTGGTGGTGAACTCCCAATTGAGTCTGATATATCTGGTGAGGTCATCAAAATACTACGAGAGGATGGTGAACCTGTAGGATATGGA GATGCACTGATTGCAATTCTCCCGTCATTTCCTGGGATAAAGAAGCTTCAGTAA
AA sequence Show only first row Show all	>Potri.003G061400.6 pacid=42785935 polypeptide=Potri.003G061400.6.p locus=Potri.003G061400 ID=Potri.003G061400.6.v4.1 annot-version=v4.1 MDTSQVIVMCVLLNFLFFFFMGQFNFLGLVSLLLVSNTVLSLKEFKDCCEFDSLGALNVKLSKLDFGGGKFGNLQQRSGVRVWMGRVQLQYAGVAISHKS RKAFRCCGSASEAEWTTKETTSLGLTSQLIPNSSEIESLVTEICNTTSIAEFELKLGGFRLYVMRDLTEKNEPTPQPLPPPPLAVTVKTTTDASDLNGSA STSLAISKQEPSFGGIKSFLDRTTDEGLMILPSPRVGFFRRSRTIKGKRAPPSCKEKQIIKEGQVLCYIEQLGGELPIESDISGEVIKILREDGEPVGYG DALIAILPSFPGIKKLQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15690			Single hybrid motif superfamil...		Potri.003G061400 [exp]	0	1
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Potri.006G049900 [exp]	2.82	0.7805
AT4G22760			Tetratricopeptide repeat (TPR)...		Potri.003G116100 [exp]	5.09	0.7753
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Potri.003G022701 [exp]	7.48	0.7146
					Potri.012G036400 [exp]	10.09	0.7203
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.015G139300 [exp]	10.81	0.7049
AT5G11470			bromo-adjacent homology (BAH) ...		Potri.018G036500 [exp]	12.48	0.7483
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.001G117200 [exp]	37.41	0.6329
AT1G68890			magnesium ion binding;thiamin ...		Potri.010G135500 [exp]	39.87	0.6715
AT1G25570			Di-glucose binding protein wit...		Potri.010G129300 [exp]	51.49	0.6254
AT2G35510		SRO1	similar to RCD one 1 (.1)		Potri.005G149701 [exp]	53.21	0.6681

Compare expression of checked genes

Potri.003G061400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.