Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19360 110 / 1e-27 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT2G35430 74 / 2e-15 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G32360 64 / 3e-11 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT1G68200 53 / 8e-08 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT1G66810 51 / 3e-07 C3HZnF AtC3H14 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G63260 43 / 0.0002 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G12130 42 / 0.0003 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G169500 [exp] 150 / 5e-43 AT3G19360 284 / 1e-93 Zinc finger (CCCH-type) family protein (.1) Potri.009G130600 [exp] 145 / 3e-41 AT3G19360 276 / 9e-91 Zinc finger (CCCH-type) family protein (.1) Potri.001G140800 [exp] 64 / 2e-11 AT1G32360 355 / 3e-121 Zinc finger (CCCH-type) family protein (.1) Potri.003G093600 [exp] 63 / 4e-11 AT1G32360 353 / 2e-120 Zinc finger (CCCH-type) family protein (.1) Potri.001G013200 [exp] 57 / 3e-09 AT5G06770 169 / 2e-51 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.003G213200 [exp] 54 / 3e-08 AT5G06770 162 / 1e-48 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.016G046600 [exp] 53 / 6e-08 AT5G06770 265 / 2e-89 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.010G118700 [exp] 53 / 7e-08 AT1G68200 243 / 1e-79 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.004G095100 [exp] 51 / 2e-07 AT1G66810 215 / 7e-68 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019431 [exp] 116 / 1e-30 AT3G19360 266 / 2e-87 Zinc finger (CCCH-type) family protein (.1) Lus10043287 [exp] 115 / 8e-30 AT3G19360 290 / 7e-96 Zinc finger (CCCH-type) family protein (.1) Lus10000486 [exp] 66 / 4e-12 AT1G32360 337 / 6e-115 Zinc finger (CCCH-type) family protein (.1) Lus10004573 [exp] 65 / 8e-12 AT1G32360 342 / 1e-116 Zinc finger (CCCH-type) family protein (.1) Lus10034624 [exp] 56 / 1e-08 AT1G68200 251 / 5e-82 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10035256 [exp] 54 / 3e-08 AT1G68200 248 / 6e-81 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10016272 [exp] 50 / 5e-07 AT3G12130 229 / 5e-75 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10021043 [exp] 47 / 6e-06 AT5G06770 262 / 1e-87 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012017 [exp] 44 / 4e-05 AT3G12130 186 / 8e-60 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10004183 [exp] 44 / 6e-05 AT5G06770 261 / 8e-86 KH domain-containing protein / zinc finger (CCCH type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.003G061600.1 pacid=42787154 polypeptide=Potri.003G061600.1.p locus=Potri.003G061600 ID=Potri.003G061600.1.v4.1 annot-version=v4.1 ATGAGTGATTCTTCACCTTCTTGCAAATACTTTACTTTTAGTACCCAAATGGTTCATTCTGGTTCTCAATGCTCCACTCAGAGCAAAGGGTTTGGGATTG TATCTAACATTGGAGACCCCTTAAGGAAGAAACCAAGAATTTGTGAAAATAACGCTGGCCCAAGTTCTAAAATGCTTGTGGGAAAAAGCAATGCCATGAT GACTGGTGGTGGCAGCTTCAAGACCCAGTTGTGCATGAAGTTCAGAACAGGGCATTGCAGTCATGGAAGCAAATGTCTTTTTGCCCATGCTGTTTGTGAT TTGAGAAAGGCCTTGCCTAACTTGAGAAGGGTTGTTGTCAATGAGGATAAAAATCTCTGTAGGATGTTCAACTCTGGCAAAGGATGCACGTATGGGAATA AGTGTCGTTTCCTTCATGTGGTTCCTGAGAATTTTCAGAAAAATTTGGGCCAGAACTGGGAGAGTTCAGCTATAAGCATTGGAACTACAGGGACTGCTTC TTCAGGAGGTCACAAAAAAGGGTATAAGAAAACAAGGCTTTGTAACAACTGGGAAATGACTGGAGGCTGCCCATATGGCAAGGTGTGTCACTTTGCTCAT GGACAACAAGAGTTAGAGAAGTCTGATGGCAGCATTGCATTGGCATCTGGGATTGTGCCAACTAAAGCTTCAAATTCTCTTCTTATGGGCAAGGATGGCA TTGGTTCTAATCACAAGCATGAAGCGCAGGCAACGCATTGCATGTTCAAGTGGAAAGCACTCAAGAAAACAAGGGGTATATATGCTGACTGGATAGAAGA TATGCACCTTCTGCATAGCTCACTGAATGAAGTAGAGAACTGA
AA sequence Show only first row Show all	>Potri.003G061600.1 pacid=42787154 polypeptide=Potri.003G061600.1.p locus=Potri.003G061600 ID=Potri.003G061600.1.v4.1 annot-version=v4.1 MSDSSPSCKYFTFSTQMVHSGSQCSTQSKGFGIVSNIGDPLRKKPRICENNAGPSSKMLVGKSNAMMTGGGSFKTQLCMKFRTGHCSHGSKCLFAHAVCD LRKALPNLRRVVVNEDKNLCRMFNSGKGCTYGNKCRFLHVVPENFQKNLGQNWESSAISIGTTGTASSGGHKKGYKKTRLCNNWEMTGGCPYGKVCHFAH GQQELEKSDGSIALASGIVPTKASNSLLMGKDGIGSNHKHEAQATHCMFKWKALKKTRGIYADWIEDMHLLHSSLNEVEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.003G061600 [exp]	0	1
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Potri.002G230000 [exp]	4.00	0.9345	Pt-GLUR3.3
AT5G23200			unknown protein		Potri.005G092100 [exp]	5.00	0.8943
AT1G07050			CCT motif family protein (.1)		Potri.001G281700 [exp]	6.92	0.9304
AT4G37300		MEE59	maternal effect embryo arrest ...		Potri.009G041100 [exp]	7.34	0.9171
AT2G25870			haloacid dehalogenase-like hyd...		Potri.018G057500 [exp]	7.34	0.9023
					Potri.017G079000 [exp]	11.66	0.9147
AT1G69360			Plant protein of unknown funct...		Potri.018G020800 [exp]	11.74	0.8946
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Potri.018G124677 [exp]	13.41	0.9003
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Potri.001G084400 [exp]	20.66	0.9167
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.008G106500 [exp]	21.35	0.8870

Compare expression of checked genes

Potri.003G061600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.