Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57190 956 / 0 PSD2 phosphatidylserine decarboxylase 2 (.1) AT4G25970 952 / 0 PSD3, PSD2 phosphatidylserine decarboxylase 3 (.1) AT4G16700 62 / 5e-10 PSD1 phosphatidylserine decarboxylase 1 (.1) AT1G18210 42 / 0.0004 Calcium-binding EF-hand family protein (.1.2) AT1G76640 42 / 0.0004 Calcium-binding EF-hand family protein (.1) AT1G73630 41 / 0.0009 EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G172400 [exp] 1150 / 0 AT4G25970 966 / 0.0 phosphatidylserine decarboxylase 3 (.1) Potri.003G078300 [exp] 62 / 7e-10 AT4G16700 566 / 0.0 phosphatidylserine decarboxylase 1 (.1) Potri.012G048200 [exp] 47 / 8e-06 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.017G029700 [exp] 47 / 1e-05 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.002G047300 [exp] 45 / 6e-05 AT3G22930 171 / 3e-54 calmodulin-like 11 (.1) Potri.005G215700 [exp] 44 / 9e-05 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1) Potri.007G128600 [exp] 44 / 0.0002 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.002G239100 [exp] 43 / 0.0002 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.002G127000 [exp] 41 / 0.0002 AT4G25970 44 / 2e-06 phosphatidylserine decarboxylase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009324 [exp] 934 / 0 AT5G57190 891 / 0.0 phosphatidylserine decarboxylase 2 (.1) Lus10010761 [exp] 880 / 0 AT5G57190 838 / 0.0 phosphatidylserine decarboxylase 2 (.1) Lus10015838 [exp] 594 / 0 AT5G57190 561 / 0.0 phosphatidylserine decarboxylase 2 (.1) Lus10015839 [exp] 402 / 2e-137 AT4G25970 381 / 4e-130 phosphatidylserine decarboxylase 3 (.1) Lus10035633 [exp] 398 / 8e-134 AT5G57190 360 / 2e-119 phosphatidylserine decarboxylase 2 (.1) Lus10007807 [exp] 60 / 3e-09 AT4G16700 515 / 0.0 phosphatidylserine decarboxylase 1 (.1) Lus10009564 [exp] 47 / 5e-06 AT3G07490 233 / 7e-80 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10019863 [exp] 45 / 6e-05 AT2G15680 233 / 9e-79 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10014050 [exp] 42 / 0.0005 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0154 [poplar] [flax] PF02666 [poplar] [flax] PS_Dcarbxylase Phosphatidylserine decarboxylase CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.003G061700.1 pacid=42787361 polypeptide=Potri.003G061700.1.p locus=Potri.003G061700 ID=Potri.003G061700.1.v4.1 annot-version=v4.1 ATGGGTCACGGAAGCTCTAAGGAATTGCCTGGTACGGAATCTACTAATAGCGAAGGTGGTTCGACTCGCTTCTCTCGAATGAAACAGAAACTTCACTTCC ACAGCAAGGATCAACACCATCCTCATCTCCGTCGCATATTCCGTCGCATTTCTGTTTCACGAGGAAATGGAACCTCCTCCTCCTCCTCCACTTCCGCTCT CAAACTCGTCTCCGCTGAGGATTTTGCTGGAATTGCTCTCCTCACTCTAATTAGCGCTGACATGCAATTCAAAGACAGGTGGCTCGCTTGTGTTTCCCTT GGCGAACAGACTTTCCGCACCCATATTTCTCACCAGACCCACAAACCTGTTTGGAACTCGGAAAAGAAACTTATGTTAGAGAAAAATGGGCCTCATCTTG CCAGGATTTCTGTTTTCGAGACCAATAGAGTATCGAAGAACAAACTTGTTGGATATTGTGAGATTGATCTACTTGAATTTCTAGCACAGGATTCAGATTC TGACTTTGAAGTGTTTGAACTTTTTGACCCAGCATCAGCTGGTAAAGTTGTCGGCAGAATTTCTCTCTCGTGTTCTGTTGAGGATCCAATTGAAACAGAG AAAAATTTTGCAAGACGCATCTTAGGAATTGTGGATTACAATGAAGATGGGCAGCTTTCTTTCTCTGAGTTCTCTGACTTAATTAAGGCTTTTGGTAATC AAGTGGCAGATAAGAAGAAAGAGGAGCTTTTTAAAGTTGCTGACAAGAATGGTGATGGTGTTGTAAGCATGGATGAGTTGGCTGAACTTCTTGCCATTCA ACAAGAAAGTGTGCCTCTTATAAATTGCTGCCCTGTTTGTGGTGAGGTTCTTGAAGTTTCTGATAAGCTAAATACCCTGGTCCATTTGAGTCTTTGTTTT GACGAGGGAACGGGAAATCAAGTTATGACAGGTGGATTTCTGACTGATAAACAGGCTTCTTATGGGTGGATGTTTAAACTGAGTGAATGGGCTCATTTTT CATCATATGATGTTGGTTTGAACTCTGGTTCAAGTGCTTCACATATTCTGGTATTTGATAGGAAGACAAAGAGGCTGGTGGAGGAGTTAATTGATAAAAA GATTGTTCTGTCAATGAGAGCAATTTATCAGTCAAAGATAGGACTGGGCCTTATGGACAAAGGAGCAAAAGAAATCTTGCAAAGCATCTCTGAGAAGCAG GGAAGGGAAATGAACACTATAGAATCTGCTAGAGACATTCCTAAGTTTGTTGCATTTTTCAAGGATCAAATAAATTTGGCTGAAATCAAGTACCCTTTAG AACATTTTAAGACATTCAATGAGTTCTTCATAAGAGAATTAAAGCCTGGTGCAAGACCAATTGCTTCCGTGGAACACGATGATGTTGCCATATGTGCAGC TGATTGCCGTTTAATGGCTTTTAAGTCTGTAGAAGACAGTCTAAGATTTTGGATCAAGGGCCGCAAATTTTCTATACAAGGGCTTTTGGGAAACGAAATA TACTCAAGTGCATTTGCTGATGGTACCTTGGTCATATTTCGATTGGCACCACAGGATTATCACCGTTTTCATTCTCCAGTTTCTGGAACCATTGACAAGT TTGTAAAAATACCTGGGTGTTTATATACAGTTAATCCTATTGCTGTCAACAGCAAGTATTGTAATGTTTTCACTCAGAATAAGAGGGAAGTTTCGATTAT TTCTACTGCACATTTTGGAAAGGTAGCATTTGTTGCAATAGGAGCAACTATGGTTGGCAGCATCACCTTCTCGAAGAAGGCTGGTGACCATGTCAAGAAA GGAGACGAGTTAGGGTATTTCTCATTTGGTGGAAGCACAGTGATTTGCGTCTTTGAAAAGGACGTGATTAAAATAGACGAGGACCTCTTAGCAAATAGTG CCAGGTCACTTGAGACCTTGGTTACTGTTGGAATGAGTTTGGGTGTTGCAACTAAGAAACAAACAAAAGTTGGTATGCCATAA
AA sequence Show only first row Show all	>Potri.003G061700.1 pacid=42787361 polypeptide=Potri.003G061700.1.p locus=Potri.003G061700 ID=Potri.003G061700.1.v4.1 annot-version=v4.1 MGHGSSKELPGTESTNSEGGSTRFSRMKQKLHFHSKDQHHPHLRRIFRRISVSRGNGTSSSSSTSALKLVSAEDFAGIALLTLISADMQFKDRWLACVSL GEQTFRTHISHQTHKPVWNSEKKLMLEKNGPHLARISVFETNRVSKNKLVGYCEIDLLEFLAQDSDSDFEVFELFDPASAGKVVGRISLSCSVEDPIETE KNFARRILGIVDYNEDGQLSFSEFSDLIKAFGNQVADKKKEELFKVADKNGDGVVSMDELAELLAIQQESVPLINCCPVCGEVLEVSDKLNTLVHLSLCF DEGTGNQVMTGGFLTDKQASYGWMFKLSEWAHFSSYDVGLNSGSSASHILVFDRKTKRLVEELIDKKIVLSMRAIYQSKIGLGLMDKGAKEILQSISEKQ GREMNTIESARDIPKFVAFFKDQINLAEIKYPLEHFKTFNEFFIRELKPGARPIASVEHDDVAICAADCRLMAFKSVEDSLRFWIKGRKFSIQGLLGNEI YSSAFADGTLVIFRLAPQDYHRFHSPVSGTIDKFVKIPGCLYTVNPIAVNSKYCNVFTQNKREVSIISTAHFGKVAFVAIGATMVGSITFSKKAGDHVKK GDELGYFSFGGSTVICVFEKDVIKIDEDLLANSARSLETLVTVGMSLGVATKKQTKVGMP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Potri.003G061700 [exp]	0	1
AT4G09740		ATGH9B14	glycosyl hydrolase 9B14 (.1)		Potri.001G098800 [exp]	9.38	0.7678
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Potri.007G088700 [exp]	11.22	0.7562
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412000 [exp]	18.00	0.7624
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.013G073000 [exp]	32.52	0.6957
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Potri.009G107500 [exp]	33.88	0.7081
AT1G75280			NmrA-like negative transcripti...		Potri.019G078100 [exp]	36.05	0.7019
AT4G24350			Phosphorylase superfamily prot...		Potri.008G028700 [exp]	39.66	0.7100
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Potri.008G054801 [exp]	45.89	0.7046
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Potri.006G227500 [exp]	59.69	0.6882
AT1G61280			Phosphatidylinositol N-acetylg...		Potri.014G043400 [exp]	67.10	0.6685

Compare expression of checked genes

Potri.003G061700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.