Plant FIBer expression Database

Potri.003G061800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G15410 388 / 3e-132 aspartate-glutamate racemase family (.1)
AT5G11280 205 / 6e-63 unknown protein
AT1G80200 148 / 4e-41 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G251600
[exp]
207 / 1e-63 AT5G11280 327 / 6e-115 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014492
[exp]
284 / 6e-92 AT1G15410 274 / 6e-91 aspartate-glutamate racemase family (.1)
Lus10030057
[exp]
281 / 2e-90 AT1G15410 277 / 9e-92 aspartate-glutamate racemase family (.1)
Lus10036085
[exp]
221 / 3e-64 AT1G80190 253 / 1e-80 partner of SLD five 1 (.1)
Lus10002030
[exp]
197 / 1e-59 AT5G11280 323 / 2e-113 unknown protein
Lus10002898
[exp]
170 / 4e-50 AT5G11280 281 / 1e-97 unknown protein
Lus10026797
[exp]
148 / 6e-41 AT5G11280 121 / 1e-33 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0399 Asp-glut_race PF01177 Asp_Glu_race Asp/Glu/Hydantoin racemase
Representative CDS sequence
>Potri.003G061800.4 pacid=42787013 polypeptide=Potri.003G061800.4.p locus=Potri.003G061800 ID=Potri.003G061800.4.v4.1 annot-version=v4.1
ATGGCTTCTTCAAAGAGATGGGCAAGCATCATATCGTCTATTGCTTCTTTTCTTCATTTCTTTATCATAATCTTTCAAGTGCCCGTTTTCAGGGTACCAT
GTAGGACTGGAACATGTACTTCACCTATAGAGGTCATGTCCTCCCACTTGATTGCAACTGAACTCTATCCTGCATTTGGGCCCAAGGCTCTTCTGTATCC
TGGTGCCATTGCTAGATCTTATAGCAAGAACAGAACCTTCCCAAGCTATAGTAAATTGTCGAAGCTATATAACTTGACCAATCTGAGGAAAACCTCTAAA
TCGACTGATCTCCAGCACCTAGAGATTCTGGCAGGAAGCTACTTAGCAGTGGCAGGAGCAGTATTAGGTCTCATAAGGCTGGGCAGGACGAGCCTCTTTG
GAACACTGCTTATCCTATGGGGCTTTGTAAGAGAAGTCATCCTGAAAAACTCTGCTAATATGAATTCCGCGAGGAGTATCCATATCTACCCAGTAACAAT
GTGCATTGCTCTTCTTTGTGCTTTCTTGACTATAAGAAAGGATGTTAGAAAGCTTATCCGTTGTTGCAGAACTCGGCGAGGTGCAAAGTTAAGAGAACTC
AAGTTGCGATTTCCAGACAAGATGTTTGATGGGAGCTTGGCAATGCCTTTCCACACGTTGAACCCATGTCATTTATTGGGTCATGTAAATACACATAGAG
CCCTCCACAAGTCAAGGTTGCAACCAGTTCTAGCTATACCCCCATCATCAATTCTCTTGCACACAGATGAGAGTGGTAAATTTCCTGATTCTAAGAAGGG
TTCTGGTTTGAGAGGAAGGGATTCTTCTGATTCATTGCTTAGTCAAGCAAATACAGTGGGTATAATAGGAGGTATATCAGTGAATTCTGCTTTGAATTTC
TTGAAAAAACTAGTCCAGGGGAGTTCAAAAGAAGGAAAAGATTGCTTCCCTTTTGTTCTTTGCTCTGATCCAGTATTGAACAAGGAGCTTTTATCACATG
AGAGAAATTCTTGTCCTTGTCCCAGGAGGCATAATGAAAAATCTCCATCGGATCATTCTGCAATTGCAGAGAATCTGCAGAATAAAAGGGTTTTTCTTGA
GAAATCAGGAGTTCAGTGCATAGTAATGCCTTGTCATATTTTGCATTCATGGCATGATGAGGTTTCTAAGGGGTGTTCTCTTCCATTCCTTCATATGGGT
GAGTGTGTTGCAAGGGAGCTCAAGGAAGCTAAGCTGAAGCCACTTGAAGCTGGTAGTCCTCTGCGGATTGGGTTATTAGCCTCCAATGCAACTTTGGCTG
CAGGGTTCTATCAGGAGAAATTGCAGAATGAGGGATTTGAGGTTGTGCTTCCAGATAAAGCAACCATGGAACACACTATAATTCCTGCAATTGAAGCTTT
AGACAGAAATGACATGGAAGGCGCACAGAATTTGCTGAGAATTGCACTGCAAGTTCTCCTTGTGAGGGCAGTGAACACAGTCATCCTTGCTTCGGAAGAA
ATGCGTGATGTTTTGCCTGAGGATGATCCACTTCTCAAGAAATGTATTGATCCAATGGATGCATTAGCCCGTTCAACTATAAAGTGGGCGCAAGCTGCAG
ATAAAGGTACATAA
AA sequence
>Potri.003G061800.4 pacid=42787013 polypeptide=Potri.003G061800.4.p locus=Potri.003G061800 ID=Potri.003G061800.4.v4.1 annot-version=v4.1
MASSKRWASIISSIASFLHFFIIIFQVPVFRVPCRTGTCTSPIEVMSSHLIATELYPAFGPKALLYPGAIARSYSKNRTFPSYSKLSKLYNLTNLRKTSK
STDLQHLEILAGSYLAVAGAVLGLIRLGRTSLFGTLLILWGFVREVILKNSANMNSARSIHIYPVTMCIALLCAFLTIRKDVRKLIRCCRTRRGAKLREL
KLRFPDKMFDGSLAMPFHTLNPCHLLGHVNTHRALHKSRLQPVLAIPPSSILLHTDESGKFPDSKKGSGLRGRDSSDSLLSQANTVGIIGGISVNSALNF
LKKLVQGSSKEGKDCFPFVLCSDPVLNKELLSHERNSCPCPRRHNEKSPSDHSAIAENLQNKRVFLEKSGVQCIVMPCHILHSWHDEVSKGCSLPFLHMG
ECVARELKEAKLKPLEAGSPLRIGLLASNATLAAGFYQEKLQNEGFEVVLPDKATMEHTIIPAIEALDRNDMEGAQNLLRIALQVLLVRAVNTVILASEE
MRDVLPEDDPLLKKCIDPMDALARSTIKWAQAADKGT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G15410 aspartate-glutamate racemase f... Potri.003G061800
[exp]
0 1
AT3G09980 Family of unknown function (DU... Potri.006G115400
[exp]
3.46 0.7400
AT5G23850 Arabidopsis thaliana protein o... Potri.015G144400
[exp]
3.60 0.7915
AT3G47570 Leucine-rich repeat protein ki... Potri.013G020900
[exp]
11.57 0.7602 Pt-RGA.59
AT4G27810 unknown protein Potri.012G016700
[exp]
53.54 0.6704
AT5G63080 2-oxoglutarate (2OG) and Fe(II... Potri.015G080400
[exp]
65.95 0.6697
AT2G36840 ACR10 ACT domain repeats 10, ACT-lik... Potri.010G228500
[exp]
83.96 0.6514
AT2G32260 ATCCT1 phosphorylcholine cytidylyltra... Potri.003G075000
[exp]
104.20 0.6276
AT3G07360 ATPUB9 ARABIDOPSIS THALIANA PLANT U-B... Potri.002G248600
[exp]
108.66 0.6698
AT3G54350 FHA EMB1967 embryo defective 1967, Forkhea... Potri.007G016900
[exp]
108.99 0.6494
AT5G57140 ATPAP28, PAP28 purple acid phosphatase 28 (.1... Potri.006G074500
[exp]
110.95 0.6679

Potri.003G061800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.