Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27340 82 / 5e-17 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30950 73 / 6e-14 UFO UNUSUAL FLORAL ORGANS, F-box family protein (.1) AT5G15710 64 / 4e-11 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G61590 48 / 6e-06 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT4G33160 44 / 0.0002 F-box family protein (.1) AT3G20620 42 / 0.0004 F-box family protein-related (.1) AT5G43190 42 / 0.0008 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G171300 [exp] 90 / 2e-19 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G057100 [exp] 89 / 3e-19 AT1G27340 613 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G149000 [exp] 72 / 6e-14 AT5G49610 528 / 0.0 F-box family protein (.1) Potri.017G102300 [exp] 68 / 3e-12 AT5G15710 744 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.004G112400 [exp] 67 / 5e-12 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G074100 [exp] 66 / 1e-11 AT1G30950 528 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.001G160900 [exp] 61 / 6e-10 AT1G30950 554 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.013G053301 [exp] 42 / 0.0006 AT3G07870 258 / 7e-83 F-box and associated interaction domains-containing protein (.1) Potri.005G124500 [exp] 42 / 0.0008 AT5G03970 77 / 3e-15 F-box associated ubiquitination effector family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007755 [exp] 82 / 6e-17 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10015775 [exp] 82 / 6e-17 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037030 [exp] 82 / 1e-16 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10018690 [exp] 72 / 2e-13 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10031955 [exp] 67 / 7e-12 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10035147 [exp] 67 / 1e-11 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10007740 [exp] 56 / 3e-08 AT5G43190 292 / 2e-94 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10010610 [exp] 54 / 7e-08 AT5G43190 327 / 2e-110 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10025938 [exp] 51 / 6e-07 AT3G24760 381 / 2e-131 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10018682 [exp] 45 / 5e-05 AT5G43190 204 / 2e-63 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif CL0162 [poplar] [flax] FBA PF08268 [poplar] [flax] FBA_3 F-box associated domain
Representative CDS sequence Show only first row Show all	>Potri.003G062000.1 pacid=42784838 polypeptide=Potri.003G062000.1.p locus=Potri.003G062000 ID=Potri.003G062000.1.v4.1 annot-version=v4.1 ATGTGGAACCGCCTCCCATCTGAACTCCTTGCTAACATCTTCTCCTTCCTCTCTCCGGACTCCTTGGCACGTGCCAAGACAGCATGCCGGTACTGGCGCA CTTGTGCCAATTCATACCCATTGAGCACCGCCGCATCAATGGTCCGGCACCACCAAGCATGGTTTGTAGCTCTGCCCACACGCAGTCGTGGGCTATGTTG CTATCTTCACAATCCAAATATCGACAAGTGGCACGTCTTATCTCTCGATTTTCAACCCCACCCGACCCGACCCATTGCCTCGATAGGGAGCCTAATCCTT TCAAGACCCACAGATTCTACAACTCTCCAATTAGCTATAAGCAACCCTTTCACTAAGGAATTCAGGTGCCTTCCAATGCTGAAGATTGCAAGGACTAATC CAGCTGTTGGTGTTGTGATCTTAGGCCCAGCCCAACACGGCCCATCTTTACATTTTCGAGTCTATGTAGCAGGAGGGATGTCCGAAGCTCCACGTGGAGC TGCCACGTATGAGCCCACAATGGAAGTGTACGACTCGGAGGATGACGCGTGGAGAATTGTGGGGTCAGTGCCAGTGGAATTTGCGGTGAGGCTAACGGTC TGGACCCCTAATGAGAGTGTCTATTCTAAAGGGGTGCTATATTGGATGACCTCGGCCCGGGCTTATAGCATAATGGGCTTTGAGATTAGGTCCAATAAAT GGCAGGAATTGAGTGTGCACATGGCAGATAAGCTTGAATTTGCCACATTAGCTCAGCTCAATGGGAGGCTGACACTTGTCGGTGGCACGAGTGGTGGCGA TGCCTGTGTGTGGGAGCTGGATGAAAGACACGCGTGGTGTTTAAAAGAGAAGATGCCAGTTGAATTGACAAGGAAACTTTTAGGGGGGAAGGCGAGCTGG GCTACAACTAAATGTGTAAGGGGTGATGGGGCTATATGTTTGTACAGAGACCTTGGTTCAGGAATGGCGGTGTGGAGAAAGGTTGGCGAGAGAGGTAGAT GGGAATGGTTCTGGGTAGAGGGTTGTTGTTCAATAAAAGGCAAACGAGTACAAAACTTGCCGATCAAAGGTGTTCTGATTCCTCCCAATCTTGCTCCTTC TTGTGCGTTCTCCAAGCAAAGACGATGA
AA sequence Show only first row Show all	>Potri.003G062000.1 pacid=42784838 polypeptide=Potri.003G062000.1.p locus=Potri.003G062000 ID=Potri.003G062000.1.v4.1 annot-version=v4.1 MWNRLPSELLANIFSFLSPDSLARAKTACRYWRTCANSYPLSTAASMVRHHQAWFVALPTRSRGLCCYLHNPNIDKWHVLSLDFQPHPTRPIASIGSLIL SRPTDSTTLQLAISNPFTKEFRCLPMLKIARTNPAVGVVILGPAQHGPSLHFRVYVAGGMSEAPRGAATYEPTMEVYDSEDDAWRIVGSVPVEFAVRLTV WTPNESVYSKGVLYWMTSARAYSIMGFEIRSNKWQELSVHMADKLEFATLAQLNGRLTLVGGTSGGDACVWELDERHAWCLKEKMPVELTRKLLGGKASW ATTKCVRGDGAICLYRDLGSGMAVWRKVGERGRWEWFWVEGCCSIKGKRVQNLPIKGVLIPPNLAPSCAFSKQRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27340			Galactose oxidase/kelch repeat...		Potri.003G062000 [exp]	0	1
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Potri.011G096600 [exp]	2.23	0.8193	Pt-TCP1.1
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Potri.006G221000 [exp]	2.44	0.8072
AT2G20740			Tetraspanin family protein (.1...		Potri.004G041500 [exp]	3.87	0.7990
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.002G159400 [exp]	7.34	0.8166	Pt-TAN1.2
					Potri.003G015433 [exp]	9.38	0.7707
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019200 [exp]	9.53	0.7567
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Potri.002G106400 [exp]	11.48	0.7647
AT2G44940	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G155700 [exp]	15.00	0.7706
AT3G18440		ATALMT9	aluminum-activated malate tran...		Potri.010G127400 [exp]	21.44	0.7204
AT5G49690			UDP-Glycosyltransferase superf...		Potri.010G182575 [exp]	22.22	0.7196

Compare expression of checked genes

Potri.003G062000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.