Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52630 666 / 0 O-fucosyltransferase family protein (.1.2) AT3G02250 217 / 5e-65 O-fucosyltransferase family protein (.1) AT5G15740 206 / 6e-61 RRT1 O-fucosyltransferase family protein (.1) AT1G14020 194 / 1e-56 O-fucosyltransferase family protein (.1) AT2G03280 189 / 1e-54 O-fucosyltransferase family protein (.1.2) AT5G35570 190 / 8e-54 O-fucosyltransferase family protein (.1) AT1G22460 187 / 1e-53 O-fucosyltransferase family protein (.1) AT4G24530 182 / 5e-52 O-fucosyltransferase family protein (.1) AT3G54100 184 / 1e-51 O-fucosyltransferase family protein (.1) AT2G37980 183 / 2e-51 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G171500 [exp] 353 / 5e-122 AT1G52630 302 / 1e-103 O-fucosyltransferase family protein (.1.2) Potri.017G101300 [exp] 215 / 2e-64 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 208 / 8e-62 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 205 / 2e-60 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 202 / 2e-59 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.012G064200 [exp] 198 / 5e-58 AT5G15740 733 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 194 / 2e-56 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.015G048100 [exp] 193 / 4e-56 AT5G15740 716 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 192 / 2e-55 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026792 [exp] 674 / 0 AT1G52630 668 / 0.0 O-fucosyltransferase family protein (.1.2) Lus10036089 [exp] 672 / 0 AT1G52630 677 / 0.0 O-fucosyltransferase family protein (.1.2) Lus10007975 [exp] 212 / 4e-63 AT5G15740 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10013503 [exp] 211 / 7e-63 AT5G15740 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10034651 [exp] 202 / 2e-59 AT5G15740 754 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 202 / 2e-59 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10021717 [exp] 202 / 3e-59 AT5G15740 752 / 0.0 O-fucosyltransferase family protein (.1) Lus10036832 [exp] 201 / 5e-59 AT5G15740 591 / 0.0 O-fucosyltransferase family protein (.1) Lus10019195 [exp] 200 / 2e-58 AT5G15740 587 / 0.0 O-fucosyltransferase family protein (.1) Lus10030437 [exp] 199 / 2e-58 AT1G14020 760 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.003G062600.2 pacid=42787515 polypeptide=Potri.003G062600.2.p locus=Potri.003G062600 ID=Potri.003G062600.2.v4.1 annot-version=v4.1 ATGATTACTGTCTCCGTGAAGCCATTGTTCACGGCCATCTTCACACTCTCGCTTTTCCTAGCTATCGTTTTGCTGTCTCCTTCTTCGCCGTTTTCATCGG TCCCTTCAAATAAACAAGCAGGGAAATCGGACATATGGGGTGTTAAGAGGCTTGTGGATTGGAGGCCGTGCAAGTGGTGGATTCATGGACCTCGCATCGC CCTACTAGCAGAGAGTAATGGATATATCCGTGTGGATTGCTATGGTGGCCTCAATCAGATGAGACGAGATTTCTGTGATGGCGTTGGCATTGCCCGCTTG TTAAATGCTACTCTGGTTTTGCCAAAGTTTGAAGCAGCTGCTTATTGGAATGAGTCAAGTGGATTTGCAGATGTATTTGATGTTGATTACTTCATTCAAC AGATGGATGGCTTCATTAAAGTTGTTAAGGAACTGCCACCAGAGGTTGCATTAAAAGAACCCTTTCATGTAGACTGTAGCAAAAGAAAAGGCCAATTTGA TTACATTGAAAGTGTCCTTCCATCTTTATTGAAATACCAATATATTTCAATTACACCAGCAATGAGTCAAAGAAGGGACAGGTATCCTCTGAATGCAAAA GCTGCACTTTGTCAAGCTTGTTATGGTTCATTACGCCTTACAAGAACCCTGGAACAGAAAGCCGCAGAACTTCTGGAAGCTATACCAAAACCCTTTCTTT CGCTTCATCTTCGATTTGAACCTGACATGGTAGCATATAGCCAATGTGAATACCCAGGCCTTTCCCCTGCCTCCAAGGAAGCCATTGAAGCTGCAAGGGG AGACAGAAAACCATGGACTGGGGAGCTGGCTCGCACTTGGAGAAACCGAGGGAAGTGTCCCCTCACGCCTAACGAGACAGCCTTCATTTTTCAGGCACTT TCCATCCCTACGAACACAAATATATACCTTGCAGCTGGGGATGGCCTGATGGAAATTGAAGGTTTAAAATCTATTTACACCAACGTGGTCACCAAATCTG CACTTCTCAGTGGCGAGGATTTCCTAAATATGCACGGGAACACAAAAGCTGCACTGGATTATTTTGTATCAATCAACAGTGATTTTTACGTGGCTACTTT TTTCGGTAACATGGATAAGATGGTTGCTGCAATGCGAGCTTATAAGGGGTTGCATAATACCCTATTCCTAAGCCGGAGAGCTTATGCAGAGCTCACTTCT AAGGGCTTGGATGGGAAGGAGTTGATGCAAGCCTTATGGCTGGCTCACAAAGAAGATTATGCCATGGGAAGAGGGTCTGCTCTGCCTGACTGCTTTTGTG ACTTCAAATCGTGA
AA sequence Show only first row Show all	>Potri.003G062600.2 pacid=42787515 polypeptide=Potri.003G062600.2.p locus=Potri.003G062600 ID=Potri.003G062600.2.v4.1 annot-version=v4.1 MITVSVKPLFTAIFTLSLFLAIVLLSPSSPFSSVPSNKQAGKSDIWGVKRLVDWRPCKWWIHGPRIALLAESNGYIRVDCYGGLNQMRRDFCDGVGIARL LNATLVLPKFEAAAYWNESSGFADVFDVDYFIQQMDGFIKVVKELPPEVALKEPFHVDCSKRKGQFDYIESVLPSLLKYQYISITPAMSQRRDRYPLNAK AALCQACYGSLRLTRTLEQKAAELLEAIPKPFLSLHLRFEPDMVAYSQCEYPGLSPASKEAIEAARGDRKPWTGELARTWRNRGKCPLTPNETAFIFQAL SIPTNTNIYLAAGDGLMEIEGLKSIYTNVVTKSALLSGEDFLNMHGNTKAALDYFVSINSDFYVATFFGNMDKMVAAMRAYKGLHNTLFLSRRAYAELTS KGLDGKELMQALWLAHKEDYAMGRGSALPDCFCDFKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52630			O-fucosyltransferase family pr...		Potri.003G062600 [exp]	0	1
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Potri.001G090600 [exp]	5.65	0.9154	ADL1.1
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Potri.003G015300 [exp]	8.36	0.9161
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Potri.010G254200 [exp]	9.48	0.9026
AT2G43040		NPG1	no pollen germination 1, tetra...		Potri.002G055200 [exp]	9.53	0.8969	Pt-NPG1.1
AT4G12650			Endomembrane protein 70 protei...		Potri.014G172200 [exp]	12.84	0.9107
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Potri.014G067400 [exp]	15.96	0.8839	Pt-TTN1.1
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Potri.011G052800 [exp]	17.02	0.8706	Pt-NSF.2
AT4G02030			Vps51/Vps67 family (components...		Potri.002G196300 [exp]	17.23	0.8958
AT2G15860			unknown protein		Potri.009G107800 [exp]	17.97	0.8799
AT5G25510			Protein phosphatase 2A regulat...		Potri.006G247100 [exp]	18.70	0.8855

Compare expression of checked genes

Potri.003G062600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.