Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52600 350 / 2e-125 Peptidase S24/S26A/S26B/S26C family protein (.1) AT3G15710 310 / 1e-109 Peptidase S24/S26A/S26B/S26C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G171200 [exp] 360 / 3e-129 AT1G52600 348 / 7e-125 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.018G005800 [exp] 286 / 3e-100 AT1G52600 289 / 3e-101 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.006G274900 [exp] 164 / 9e-53 AT1G52600 132 / 1e-40 Peptidase S24/S26A/S26B/S26C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023131 [exp] 350 / 2e-125 AT1G52600 339 / 5e-121 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10011491 [exp] 317 / 2e-112 AT1G52600 307 / 9e-109 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10030080 [exp] 292 / 2e-102 AT1G52600 293 / 8e-103 Peptidase S24/S26A/S26B/S26C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0299 [poplar] [flax] Peptidase_SF PF00717 [poplar] [flax] Peptidase_S24 Peptidase S24-like
Representative CDS sequence Show only first row Show all	>Potri.003G062800.1 pacid=42786617 polypeptide=Potri.003G062800.1.p locus=Potri.003G062800 ID=Potri.003G062800.1.v4.1 annot-version=v4.1 ATGGGTTGGATCGGAGACACCGTAGACTCCGTTAAATCGATCCAGATTCGGCAGCTACTCACCCAGGCCGTCAGTTTAGGAATGATTGTTACATCTGCGC TAATAATATGGAAGGCATTGATGTGCATCACTGGCAGTGAATCTCCTGTGGTGGTTGTTCTTTCTGGAAGTATGGAACCTGGCTTCAAGAGGGGTGACAT TTTGTTTTTGCACATGAGTAAAGATCCTATTCGTGCAGGAGAAATTGTTGTTTTTAATGTTGATGGTCGTGAAATTCCAATTGTTCATCGTGTAATTAAG GTCCATGAAAGGCAAGATACTGGGGAAGTTGATGTCCTCACAAAAGGAGATAATAATTATGGGGATGACAGGCTTTTGTATGCTCAAGGGCAGCTCTGGC TTCAGCGGCATCACATCATGGGCAGAGCTGTTGGGTTCTTACCTTATGTTGGTTGGGTAACGATTATAATGACCGAAAAGCCTATTATCAAGTATATTCT TATTGGCGCATTGGGACTGCTTGTTATAACTTCAAAGGACTAA
AA sequence Show only first row Show all	>Potri.003G062800.1 pacid=42786617 polypeptide=Potri.003G062800.1.p locus=Potri.003G062800 ID=Potri.003G062800.1.v4.1 annot-version=v4.1 MGWIGDTVDSVKSIQIRQLLTQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIK VHERQDTGEVDVLTKGDNNYGDDRLLYAQGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Potri.003G062800 [exp]	0	1
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.004G226600 [exp]	1.41	0.7628
AT4G38370			Phosphoglycerate mutase family...		Potri.009G165400 [exp]	5.47	0.7215
AT2G03870		EMB2816	EMBRYO DEFECTIVE 2816, Small n...		Potri.001G269500 [exp]	9.79	0.6975
AT2G30410		TFCA, KIS	TUBULIN FOLDING FACTOR A, tubu...		Potri.013G071100 [exp]	9.94	0.7312	TFCFA,Pt-KIS.1
AT2G45640		ATSAP18, HDA19	SIN3 ASSOCIATED POLYPEPTIDE 18...		Potri.003G119300 [exp]	10.58	0.6742
AT5G27450		MVK, MK	mevalonate kinase (.1.2.3)		Potri.013G024000 [exp]	11.95	0.6774
AT3G18940			clast3-related (.1)		Potri.004G148500 [exp]	12.32	0.7106
AT5G11900			Translation initiation factor ...		Potri.006G228100 [exp]	13.96	0.6745
AT5G66140		PAD2	proteasome alpha subunit D2 (....		Potri.009G133800 [exp]	14.14	0.7499	Pt-PAD1.3
AT5G25940			early nodulin-related (.1)		Potri.019G033700 [exp]	17.74	0.7276

Compare expression of checked genes

Potri.003G062800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.