Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14010 322 / 1e-101 CID4 CTC-interacting domain 4 (.1.2.3.4) AT1G54170 309 / 5e-97 CID3 CTC-interacting domain 3 (.1) AT5G54920 57 / 3e-08 unknown protein AT4G26990 51 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G171100 [exp] 957 / 0 AT3G14010 298 / 9e-93 CTC-interacting domain 4 (.1.2.3.4) Potri.011G138600 [exp] 67 / 2e-11 AT5G54920 148 / 1e-38 unknown protein Potri.001G423200 [exp] 65 / 1e-10 AT5G54920 253 / 3e-77 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037656 [exp] 449 / 1e-149 AT3G14010 357 / 1e-114 CTC-interacting domain 4 (.1.2.3.4) Lus10015638 [exp] 382 / 1e-125 AT3G14010 294 / 2e-92 CTC-interacting domain 4 (.1.2.3.4) Lus10040755 [exp] 61 / 3e-09 AT5G54920 269 / 6e-84 unknown protein Lus10016477 [exp] 56 / 6e-08 AT5G54920 271 / 5e-85 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06741 [poplar] [flax] LsmAD LsmAD domain CL0527 [poplar] [flax] Sm-like PF14438 [poplar] [flax] SM-ATX Ataxin 2 SM domain
Representative CDS sequence Show only first row Show all	>Potri.003G063000.11 pacid=42784977 polypeptide=Potri.003G063000.11.p locus=Potri.003G063000 ID=Potri.003G063000.11.v4.1 annot-version=v4.1 ATGAATTTGCCACAGGCTATGCATCCCAAATCTTCTGCTAATGGTTTTGGTCGTCGGAGAGCTGAAAGGGATTGGGGGACGAGGTTTGAAAATAAGGTGC AATCTGGAAAACCACATACCAATAGATCGGGTGCGATGGGAAAAGTTGGAGTTTATGAGAGTCCTTCGCGTGAACGGCTCATATATTTAACAACTTGTCT TATTGGGCATCCTGTGGAAGTCCAGCTGAAAAATGGATCCGTATACTCTGGAACATGTTACACAACAAATGTTGAAAAGGAATTTGCATTCTCTTGCTTT TCTCATTCAGCCATAATTTTGAAAATGGCTCGCTTGATAAAGGACATTTCTTTCCGAGGCCAAAAGGCAGAATTTGTCAGCAAGGCTCCATCAAAGACTT TGATTTTACCTGGAAAAGAAGTTGTCCAAGTTATTGCAAAGGATGTCTCCGTTACCGTAGATGGGATGTCCAATGAGCCCCAACATGCAAAGCAGCAAGA AATTATGATTGACTCCTATATATCACAACCACGACAAGTTGAAGCGGAGAGAGAGCTGGAACCTTGGATCCCTGAAAAAGATGATCCACAATGCCCTGAA TCAGAGAACATATTTGATGGCCATTGGAATAGGGGCTGGGATCAATTTGAAACAAATGAAATGCTGTTTGGAGTAAAAAGCACCTTTGACGAGGAACTTT ATACAACAAAGCTGGAGAGGGGTCCTCGGATGAAAGAATTGGAAAGGGAAGCTGTGAGGATAGCAAGAGAGATCGAGGGGGAGGAAACAAGCGACCTTCA CTTAGCAGAGGAAAGAGGCATCAATCTTCATGAAAGTTGTAATATCGATGAGGAGACCCGATACTCATCAGTCTATAGAGGTGGAGCCATTGATGATGGT GGGTATGAAGAACTTGATGATATAGTGATGAATTCTCACAACAGTGAAACTTTTGGAGGGCCATCTGCCTCTTCCATTAAGAAGTTGGCTGATTTGAGCC ATGCAAAAAGCAATGATGGGCCTCGAGTGTTATCAAGCTCTTCCTTGGATGAGGCACAATGCTCTCAATCAAGTACTTGTGCAGATCTGCATCATCCAGG ATCTCATGATCTTGCTGCACAGCTGTCATCAGAACCTTCTAAAGGTTTCTCCACTTCAGATAGTGACAGCAGGGTCCAAGAGGATCGGCATCATGAACAT GGAGAACTTGACAGCATCAAGGAGCTTGTAGAAGAGCAGATACTAACTCAGGATGCTCAATTGCCAAAAGATTCCAAGTTACTGGATGGCAAGAAAAATG AATCTGATAAAGGGAGGCCATCCTCTAATACCACTGCTTATGCCCCTTCATCCAATGTCTATCCAAAAAATAATGAAAAGGCTAGCCCCCCTGGCCAACC GTTAGAGGATGCAGCATCTGCCAAAGGATCTGGAGAAACGCAGCCTGTGAACTCTCGTGGACGACCTGGTAGTTCCACTTCATCTAATTCAGATTGTGCA GGTGCCTTGCTAGCTTCTAGTGGTCCTGGTTTATCACCAAGCTCATCAATGGGTTCATTATCTTCTGAGAAATCAACATTAAATCCCTATGCCAAGGAAT TTAAACTTAATCCCAATGCCAAGAGTTTCACCCCTTCTCAAATGCCTCCTAGGCCCCCTTCCCCAATGTCAGATGGTCCCTTCTATTTTCAACCTAATGT TTCTAATCTACCACATATGCATGGCATGCCTATGGGAATTCTTGGACCTTCATTCAATGGGCAACAGCCTGTTATATTTAATCCACAGGCTGCACCATTG CAAACTCCGCAAGCATATTTTCATCCAGGTGGACCTCAGTTTGGGCAGCAGATGCTTGTTGGCCACCCTAGGCAAGTCTTGTACATGCCAAACTACCAGC CTGAAATGCCATATAAAGGACGAGAGTTTTAA
AA sequence Show only first row Show all	>Potri.003G063000.11 pacid=42784977 polypeptide=Potri.003G063000.11.p locus=Potri.003G063000 ID=Potri.003G063000.11.v4.1 annot-version=v4.1 MNLPQAMHPKSSANGFGRRRAERDWGTRFENKVQSGKPHTNRSGAMGKVGVYESPSRERLIYLTTCLIGHPVEVQLKNGSVYSGTCYTTNVEKEFAFSCF SHSAIILKMARLIKDISFRGQKAEFVSKAPSKTLILPGKEVVQVIAKDVSVTVDGMSNEPQHAKQQEIMIDSYISQPRQVEAERELEPWIPEKDDPQCPE SENIFDGHWNRGWDQFETNEMLFGVKSTFDEELYTTKLERGPRMKELEREAVRIAREIEGEETSDLHLAEERGINLHESCNIDEETRYSSVYRGGAIDDG GYEELDDIVMNSHNSETFGGPSASSIKKLADLSHAKSNDGPRVLSSSSLDEAQCSQSSTCADLHHPGSHDLAAQLSSEPSKGFSTSDSDSRVQEDRHHEH GELDSIKELVEEQILTQDAQLPKDSKLLDGKKNESDKGRPSSNTTAYAPSSNVYPKNNEKASPPGQPLEDAASAKGSGETQPVNSRGRPGSSTSSNSDCA GALLASSGPGLSPSSSMGSLSSEKSTLNPYAKEFKLNPNAKSFTPSQMPPRPPSPMSDGPFYFQPNVSNLPHMHGMPMGILGPSFNGQQPVIFNPQAAPL QTPQAYFHPGGPQFGQQMLVGHPRQVLYMPNYQPEMPYKGREF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14010		CID4	CTC-interacting domain 4 (.1.2...		Potri.003G063000 [exp]	0	1
AT1G06230		GTE4	global transcription factor gr...		Potri.019G090700 [exp]	6.32	0.8477
AT2G22720			SPT2 chromatin protein (.1.2.3...		Potri.007G009700 [exp]	6.92	0.8245
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Potri.001G190000 [exp]	10.39	0.8393	PAFA901
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Potri.010G085500 [exp]	12.68	0.8239	PAFE901
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.012G094300 [exp]	15.96	0.8339
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.005G048900 [exp]	18.11	0.7896	XRN4.1
AT3G10070		TAF12, TAFII58	TATA-ASSOCIATED FACTOR II 58, ...		Potri.006G083500 [exp]	18.30	0.8287	Pt-TAFII58.1
AT1G11240			unknown protein		Potri.004G035200 [exp]	19.59	0.8044
AT3G08020			PHD finger family protein (.1)		Potri.009G059500 [exp]	21.84	0.8220
AT1G06230		GTE4	global transcription factor gr...		Potri.013G118900 [exp]	25.76	0.8339

Compare expression of checked genes

Potri.003G063000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.