Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATPDAT.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13640 1078 / 0 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) AT3G44830 820 / 0 Lecithin:cholesterol acyltransferase family protein (.1) AT1G04010 81 / 1e-15 ATPSAT1 phospholipid sterol acyl transferase 1 (.1) AT1G27480 47 / 2e-05 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G171000 [exp] 1247 / 0 AT5G13640 1055 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.004G190100 [exp] 842 / 0 AT3G44830 911 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Potri.009G150800 [exp] 222 / 7e-69 AT3G44830 204 / 9e-63 Lecithin:cholesterol acyltransferase family protein (.1) Potri.014G195500 [exp] 82 / 5e-16 AT1G04010 1040 / 0.0 phospholipid sterol acyl transferase 1 (.1) Potri.015G121000 [exp] 56 / 1e-07 AT4G19860 781 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G121596 [exp] 54 / 2e-07 AT4G19860 756 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G076300 [exp] 49 / 1e-05 AT3G03310 632 / 0.0 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) Potri.014G014400 [exp] 45 / 0.0001 AT1G27480 535 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015639 [exp] 1104 / 0 AT5G13640 1053 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10037657 [exp] 1090 / 0 AT5G13640 1049 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10017165 [exp] 1022 / 0 AT5G13640 991 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10021564 [exp] 1019 / 0 AT5G13640 989 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10019519 [exp] 853 / 0 AT3G44830 923 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10043360 [exp] 526 / 0 AT3G44830 581 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10043361 [exp] 86 / 1e-19 AT5G13640 85 / 4e-20 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10008234 [exp] 81 / 2e-15 AT1G04010 991 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10024927 [exp] 80 / 3e-15 AT1G04010 1021 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10003615 [exp] 77 / 2e-14 AT1G04010 1005 / 0.0 phospholipid sterol acyl transferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF02450 [poplar] [flax] LCAT Lecithin:cholesterol acyltransferase
Representative CDS sequence Show only first row Show all	>Potri.003G063100.1 pacid=42787468 polypeptide=Potri.003G063100.1.p locus=Potri.003G063100 ID=Potri.003G063100.1.v4.1 annot-version=v4.1 ATGGCTTTAATTCGTCGCCGAAAACCTGTCGAACCCAGTAAAACCTCAGTGCAAAGAGAGGAGGGGGAGGAGGAGGGGGAGGAGGAAGACAATAGTAAAA ACAAACACCCAAAGAAGAGTTACACAAAATCCAAACCAAAATGGACATGTTTAGACAATTGTTGCTGGTTTGTTGGGTGCATATGTGTAACTTGGTGGAT TTTATTGTTTCTTTACAACGTTATGCCTGCTTCTTTCCCTCAATATGTGACTGAGGCAATCACTGGTCCTTTGCCTGATCCACCTGGTGTCAAGTTGAGG AAAGAAGGGTTGAAGGCAAAGCATCCTGTGGTTTTTGTTCCTGGGATTGTTACTGGAGGGCTTGAGCTGTGGGAAGGGCATCAGTGTGCTGATGGATTGT TTAGGAAAAGGCTATGGGGTGGAGCTTTTGGTGAAGTTTATAGAAGGCCTCTCTGCTGGGTGGAACATATGTCACTGGACAATGAAACTGGATTGGATCC TCCAGGTATAAGGGTCAGGCCTGTCTGTGGACTTGTGGCTGCTGATTACTTTGCTCCAGGATATTTTGTATGGGCAGTTTTGATTGCTAATTTGGCACGC ATTGGATATGAGGAGAAGACAATGTACATGGCATCATATGATTGGAGACTTTCATTTCAGAATACTGAGGTCCGTGACCAAACTTTAAGCCGCATAAAAA GTAATATTGAACTCATGGTTGCAACAAATGGTGGGAACAAGGCAGTTATTATACCACATTCCATGGGTGCTTTGTACTTTCTGCATTTTATGAAGTGGGT GGAGGCACCAGCTCCAATGGGTGGTGGGGGTGGTCCAGATTGGTGTGCTAAGCATATCAAGGCAGTGATGAATATTGGTGGACCATTTTTAGGCGTTCCA AAAGCTGTCTCTGGACTTTTCTCTGCTGAAGCGAAGGATATTGCAGTTGCCAGGGCCATTGCACCTGGTGTCTTGGACAAAGATTTATTTGGCTTTCAGA CATTGCAACATATAATGAGGATGTCTCGCACATGGGATTCAACCATGTCAATGATTCCAAAAGGTGGTGCCACTATTTGGGGTGATCTTGACTGGTCACC TGAGGAAGGATATATTCCTATTAAGAGAAAGCAAAAAAACACTGACACACAGAAAGCAAGCCAAGATGGCCCAGAAAGAAAGATCTCTGAAATAAAGAGA GCCAATTATGGAAGGATCATATCCTTTGGGAAGGATGTAGCTGAGGCACTTTCATCTGACATTGAGAGGATTGACTTCAGGGATGCTGTTAAAGGTCAAA GTATTGCAAACACCTCCTGTCGTGATGTGTGGACGGAGTACCATGACATGGGATTTGGAGGTATTAAAGCTGTTGCAGAATATAAGGTTTATACTGCTGG ATCTATTCTAGATCTGCTGCACTTTGTTGCCCCAAAGATGATGGAGCGTGGCAGTGCTCATTTCTCTTATGGAATTGCTGATGATTTGGACGATCCAAAA TACCAGCACTACAAATATTGGTCAAACCCTTTGGAGACAAAATTGCCCAATGCCCCAGAAATGGAGGTTTTTTCCCTGTATGGAGTGGGCATACCAACCG AAAGATCTTATGTTTACAAGTTATCTCCTTCAGCTGAGTGCGCTATTCCATTTCAGATTGATTCATCAGCTGACGAACAATTTGAAGACAGCTGCCTGAA AGGTGGAGTCTATACTGTTGATGGGGATGAGACTGTTCCTGTTTTAAGTTCAGGCTTCATGTGTGCTAAAGGTTGGCGTGGGAAAACAAGATTCAACCCT TCAGGAAGTCGAATGTATATTAGAGAGTACGATCATTCTCCTCCAACAAACTTGTTAGAAGGTCGGGGCACCCAAAGTGGTGCTCACGTTGATATAATGG GAAACTTTGCTTTGATTGAGGATATAATGAGAGTGGCAGCTGGTGCTACAGGAGAAGAGTTGGGGGGTGATCAAGTTCATTCAGATATATTTAAGTGGTC TGAGAAGATCCATCTACAACTGTGA
AA sequence Show only first row Show all	>Potri.003G063100.1 pacid=42787468 polypeptide=Potri.003G063100.1.p locus=Potri.003G063100 ID=Potri.003G063100.1.v4.1 annot-version=v4.1 MALIRRRKPVEPSKTSVQREEGEEEGEEEDNSKNKHPKKSYTKSKPKWTCLDNCCWFVGCICVTWWILLFLYNVMPASFPQYVTEAITGPLPDPPGVKLR KEGLKAKHPVVFVPGIVTGGLELWEGHQCADGLFRKRLWGGAFGEVYRRPLCWVEHMSLDNETGLDPPGIRVRPVCGLVAADYFAPGYFVWAVLIANLAR IGYEEKTMYMASYDWRLSFQNTEVRDQTLSRIKSNIELMVATNGGNKAVIIPHSMGALYFLHFMKWVEAPAPMGGGGGPDWCAKHIKAVMNIGGPFLGVP KAVSGLFSAEAKDIAVARAIAPGVLDKDLFGFQTLQHIMRMSRTWDSTMSMIPKGGATIWGDLDWSPEEGYIPIKRKQKNTDTQKASQDGPERKISEIKR ANYGRIISFGKDVAEALSSDIERIDFRDAVKGQSIANTSCRDVWTEYHDMGFGGIKAVAEYKVYTAGSILDLLHFVAPKMMERGSAHFSYGIADDLDDPK YQHYKYWSNPLETKLPNAPEMEVFSLYGVGIPTERSYVYKLSPSAECAIPFQIDSSADEQFEDSCLKGGVYTVDGDETVPVLSSGFMCAKGWRGKTRFNP SGSRMYIREYDHSPPTNLLEGRGTQSGAHVDIMGNFALIEDIMRVAAGATGEELGGDQVHSDIFKWSEKIHLQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Potri.003G063100 [exp]	0	1	Pt-ATPDAT.1
AT4G16420		PRZ1, ADA2B	PROPORZ1, homolog of yeast ADA...		Potri.004G135400 [exp]	1.41	0.8740
AT2G35900			unknown protein		Potri.016G066800 [exp]	4.89	0.7876
AT4G15470			Bax inhibitor-1 family protein...		Potri.010G028900 [exp]	6.32	0.8182
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.008G157600 [exp]	7.87	0.8572	Pt-HSFA6.2
AT4G12040		AtSAP7	stress-associated protein 7, A...		Potri.001G115000 [exp]	8.00	0.7718
AT2G47710			Adenine nucleotide alpha hydro...		Potri.014G130100 [exp]	8.36	0.7968
AT1G53540			HSP20-like chaperones superfam...		Potri.010G175200 [exp]	8.66	0.8556	Pt-HSP17.8
AT5G01650			Tautomerase/MIF superfamily pr...		Potri.016G126700 [exp]	10.48	0.7914
					Potri.014G134750 [exp]	12.12	0.7610
AT1G53580		GLY3, GLX2-3, E...	GLYOXALASE 2-3, ETHE1-LIKE, gl...		Potri.005G204800 [exp]	13.07	0.7981

Compare expression of checked genes

Potri.003G063100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.