Plant FIBer expression Database

Potri.003G063400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G54200 173 / 9e-50 unknown protein
AT3G13980 167 / 1e-47 unknown protein
AT3G42800 98 / 2e-22 unknown protein
AT5G12050 59 / 2e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G170500
[exp]
657 / 0 AT1G54200 167 / 2e-47 unknown protein
Potri.018G049900
[exp]
297 / 2e-96 AT1G54200 122 / 5e-31 unknown protein
Potri.006G222700
[exp]
293 / 9e-95 AT1G54200 114 / 4e-28 unknown protein
Potri.006G144700
[exp]
167 / 2e-47 AT3G13980 130 / 2e-34 unknown protein
Potri.018G065000
[exp]
164 / 3e-46 AT3G42800 139 / 1e-37 unknown protein
Potri.010G154200
[exp]
43 / 0.0003 AT1G69160 114 / 2e-29 unknown protein
Potri.008G098200
[exp]
43 / 0.0003 AT1G69160 134 / 2e-36 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008457
[exp]
165 / 8e-47 AT3G13980 151 / 1e-42 unknown protein
Lus10037659
[exp]
164 / 1e-46 AT3G13980 193 / 9e-59 unknown protein
Lus10025011
[exp]
139 / 2e-36 AT3G13980 115 / 1e-28 unknown protein
Lus10026463
[exp]
127 / 4e-32 AT1G54200 107 / 7e-26 unknown protein
Lus10015641
[exp]
112 / 1e-27 AT3G13980 176 / 3e-52 unknown protein
PFAM info
Representative CDS sequence
>Potri.003G063400.1 pacid=42785341 polypeptide=Potri.003G063400.1.p locus=Potri.003G063400 ID=Potri.003G063400.1.v4.1 annot-version=v4.1
ATGGATAGATGGGAGAAACCTCTAAGAGATGATAGGTATAGACACCAAAGGGAGAACCCATCTTTCTCCTCTACTCTTCTTGATGCTATCTACCGTTCCA
TAGATGAAAATGGAAGTGGTAAAGGAGAGGAGGAGCAGCTGATTTACTTCAGAGAAACCATGAGAAAGAAGCATGAGAATAATGGTATTAAAGATGGAGA
AATGACAAGTTTGCAAAGAGCATGCATGATAGACAAGTGGATGGAGAAGAAGGTTAGCCATGAGAAGGTTGCTGTAAGGCGAAAATCCATGGCGGATTTT
GAGAATAAATCTCGAAAAGATGTAGATTCTGTGCTGTTAAATTCAAGCTCGACTTCCTCAGAATCTAGCTGTGGTGGTGGTTTTTCATCATCAGAATCTG
AATCAATTTATGGTGTCAACTCATCAAGATCATCAACAACAAGTTACACCATGCAAAGGCCTAAGCCTATCAGAACCAGCATTTCTGCTAGGCCAGAGAA
ATACCAAAGACGTGAAGATCATCATCAAATTGATATGTATCATAATCATGAGAGAAATTATGCACCAAACCAGAAGGCAAAACATGAAGGCAGTTTTGTC
AAGACAAAATCGAAGGCCTTAAAGATTTATGGTGATCTCAAGAAGGTCAAACAGCCTATATCACCCGGCGGCCGGCTTGCAAGCTTTCTCAACTCTCTTT
TCACTGCAGGCAATGCAAAGAAGGCCAAGATTTCGACTTCAGGAGGCAGGTATGAGGAGAGGAAGTTAAAATCTGAGCAAGCATCTACATGCTCTTCAGC
TTCTTCATTTTCAAGGTCTTGCTTGAGCAAAACACCTTCTTCAAGGGGAGGGAAATTGAGCAGCAACAACGGAGCCAAAAGGTCAGTGAGGTTCTATCCT
GTTAGTGTGATTGTTGACGAGGATTGTAGGCCTTGTGGGCATAAAAGTCTATATGGAGGTGATTGTCAAGAATTGAGTAGTACTCTAGTGGCAACTACAG
TTACAGCAGACGCAAGAAATAATGTTCCCACAAGTGGTGAAGAGCTGAAGTTCCATGTATCGAATGAAAATCGCCGAATCGAGGAAGTTGCAAGGAATCT
TTTAAAGAACTATCAAAGGAAGAAGGAAGAGCAATTCGATCATATGAGCACCGATCTTTGCAATGACAATAATCATGAAGTCATGTCTAGTGATGAGGAA
GAGGAAGAAGAATCTGATGTAGCAAGCTGTGCAAGTTCTGATTTGTTTGAATTAGATAATCTTTCTGCTATTGGAATCGAAAGGTATAGAGAAGAACTGC
CCGTGTATGAAACAACTCATCTTGGTACTAATCGAGCCATTGCTAATGGTTTAATCCTGTAA
AA sequence
>Potri.003G063400.1 pacid=42785341 polypeptide=Potri.003G063400.1.p locus=Potri.003G063400 ID=Potri.003G063400.1.v4.1 annot-version=v4.1
MDRWEKPLRDDRYRHQRENPSFSSTLLDAIYRSIDENGSGKGEEEQLIYFRETMRKKHENNGIKDGEMTSLQRACMIDKWMEKKVSHEKVAVRRKSMADF
ENKSRKDVDSVLLNSSSTSSESSCGGGFSSSESESIYGVNSSRSSTTSYTMQRPKPIRTSISARPEKYQRREDHHQIDMYHNHERNYAPNQKAKHEGSFV
KTKSKALKIYGDLKKVKQPISPGGRLASFLNSLFTAGNAKKAKISTSGGRYEERKLKSEQASTCSSASSFSRSCLSKTPSSRGGKLSSNNGAKRSVRFYP
VSVIVDEDCRPCGHKSLYGGDCQELSSTLVATTVTADARNNVPTSGEELKFHVSNENRRIEEVARNLLKNYQRKKEEQFDHMSTDLCNDNNHEVMSSDEE
EEEESDVASCASSDLFELDNLSAIGIERYREELPVYETTHLGTNRAIANGLIL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G54200 unknown protein Potri.003G063400
[exp]
0 1
AT2G31160 OBO1, LSH3 ORGAN BOUNDARY 1, LIGHT SENSIT... Potri.001G460400
[exp]
1.00 0.8312
AT3G30530 bZIP ATBZIP42 basic leucine-zipper 42 (.1) Potri.004G111100
[exp]
3.16 0.8179
AT2G30080 ATZIP6, ZIP6 ZIP metal ion transporter fami... Potri.009G074100
[exp]
4.24 0.8146 ZIP6.2
AT1G13600 bZIP ATBZIP58 basic leucine-zipper 58 (.1) Potri.008G113400
[exp]
4.89 0.7994
AT5G54310 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.... Potri.011G044100
[exp]
5.29 0.8102
AT2G37050 Leucine-rich repeat protein ki... Potri.006G132100
[exp]
5.74 0.7757
AT2G25490 FBL6, EBF1 EIN3-binding F box protein 1 (... Potri.018G027700
[exp]
6.32 0.7833
Potri.001G051300
[exp]
8.71 0.7568
AT3G10250 Plant protein 1589 of unknown ... Potri.016G038100
[exp]
9.21 0.8003
Potri.013G005300
[exp]
12.96 0.7421

Potri.003G063400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.