Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-DRG1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72660 678 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G17470 667 / 0 ATDRG1 developmentally regulated G-protein 1 (.1.2) AT4G39520 399 / 5e-138 GTP-binding protein-related (.1) AT5G18570 66 / 2e-11 EMB3138, ATOBGL, CPSAR1, EMB269, ATOBGC EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) AT1G07615 59 / 3e-09 GTP-binding protein Obg/CgtA (.1) AT1G56050 50 / 2e-06 GTP-binding protein-related (.1) AT1G30580 49 / 3e-06 GTP binding (.1) AT5G66470 49 / 6e-06 RNA binding;GTP binding (.1) AT1G50920 48 / 1e-05 Nucleolar GTP-binding protein (.1) AT1G80770 45 / 6e-05 PDE318 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G170300 [exp] 711 / 0 AT1G72660 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.007G080900 [exp] 408 / 1e-141 AT4G39520 647 / 0.0 GTP-binding protein-related (.1) Potri.010G022400 [exp] 65 / 4e-11 AT5G18570 687 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.002G029600 [exp] 60 / 1e-09 AT5G18570 144 / 7e-37 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.001G239600 [exp] 57 / 9e-09 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.011G164000 [exp] 50 / 2e-06 AT1G30580 691 / 0.0 GTP binding (.1) Potri.001G465900 [exp] 49 / 4e-06 AT1G30580 681 / 0.0 GTP binding (.1) Potri.001G457900 [exp] 49 / 4e-06 AT1G56050 663 / 0.0 GTP-binding protein-related (.1) Potri.001G258900 [exp] 48 / 8e-06 AT1G50920 999 / 0.0 Nucleolar GTP-binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015662 [exp] 706 / 0 AT1G72660 760 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10037676 [exp] 702 / 0 AT1G72660 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10005800 [exp] 405 / 2e-140 AT4G39520 682 / 0.0 GTP-binding protein-related (.1) Lus10006801 [exp] 389 / 5e-133 AT4G39520 655 / 0.0 GTP-binding protein-related (.1) Lus10034166 [exp] 66 / 3e-11 AT5G18570 647 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10043418 [exp] 66 / 3e-11 AT5G18570 724 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10024297 [exp] 60 / 2e-09 AT5G18570 171 / 2e-46 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10016548 [exp] 54 / 1e-07 AT1G07615 511 / 1e-178 GTP-binding protein Obg/CgtA (.1) Lus10040813 [exp] 52 / 5e-07 AT1G07615 293 / 1e-95 GTP-binding protein Obg/CgtA (.1) Lus10038543 [exp] 51 / 1e-06 AT1G30580 713 / 0.0 GTP binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase CL0072 [poplar] [flax] Ubiquitin PF02824 [poplar] [flax] TGS TGS domain CL0072 [poplar] [flax] PF16897 [poplar] [flax] MMR_HSR1_Xtn C-terminal region of MMR_HSR1 domain
Representative CDS sequence Show only first row Show all	>Potri.003G063500.5 pacid=42785128 polypeptide=Potri.003G063500.5.p locus=Potri.003G063500 ID=Potri.003G063500.5.v4.1 annot-version=v4.1 ATGGGGATCATTGAGAAGATCAAAGAAATCGAGGCCGAGATGGCCCGTACCCAGAAAAATAAAGCCACAGAGTATCATCTTGGTCAGCTCAAGGCAAAGA TAGCAAAGCTAAGGACACAACTATTGGAGCCTCCTAAAGGTTCTAGTGGAGCTGGAGATGGTTTTGAAGTTACAAAATTTGGCCATGGACGTGTCGCGCT AATTGGATTTCCAAGTGTGGGGAAGTCAACACTTTTAACAATGTTAACGGGCACACATTCAGAAGCTGCATCATATGAGTTCACAACACTTACCTGTATT CCTGGGATTATACATTATAACGATACCAAAATTCAACTGCTTGACCTCCCTGGAATTATTGAAGGCGCTTCTGAAGGCAAGGGACGTGGAAGACAGGTTA TTGCTGTTTCCAAGTCTTCAGACATTGTGTTGATGGTTCTTGATGCCTCAAAAAGTGAGGGTCATCGACAAATATTAACCAGGGAACTAGAAGCTGTAGG TTTGCGCTTAAACAAGAGACCACCTCAAATTTATTTCAAGAAGAAAAAAACAGGGGGCATCTCTTTCAACAGCACTTTGCATCTAACTCATGTAGATGAG AAGCTTTGTTATCAGATTCTACATGAATACAAAATTCACAATGCAGAGGTGCTATTCCGCGAGGATGCAACAGTGGATGATCTAATAGATGTGATCGAGG GTAATCGTAAATACATGAAGTGCATATATGTCTATAACAAGATAGATGTTATAGGTATTGATGACGTGGACAAGTTAGCTCGCCAGCCAAACTCTGTTGT CATTAGCTGCAATTTAAAGCTCAATTTTGACAGACTACTAGCAAAAATGTGGGAAGCAATGGGGCTTGTGAGAGTCTACACAAAACCACAAGGCCAGCAA CCTGATTTTAGTGATCCTGTAGTTCTTTCAGCTGATAGAGGTGGGTGCACGGTTGAAGACTTCTGCAATCACATACACAGAAATTTAATTAAGGATGTGA AATATGTGCTTGTGTGGGGTACAAGCGCAAGGCACTACCCGCAGCACTGTGGCCTTGGTCATGTTCTCCAAGATGAGGATGTAGTTCAGATTGTTAAGAA AAAGGAAAGGGAAGATGGAGGAGGAAGGGGTCGGTTCAAATCACATTCAACAGCTCCTGCCCGCATATCTGACAGAGAGAAGAAAGCTCCATTGAAGACA TAA
AA sequence Show only first row Show all	>Potri.003G063500.5 pacid=42785128 polypeptide=Potri.003G063500.5.p locus=Potri.003G063500 ID=Potri.003G063500.5.v4.1 annot-version=v4.1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGDGFEVTKFGHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCI PGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTRELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLHLTHVDE KLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCIYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNFDRLLAKMWEAMGLVRVYTKPQGQQ PDFSDPVVLSADRGGCTVEDFCNHIHRNLIKDVKYVLVWGTSARHYPQHCGLGHVLQDEDVVQIVKKKEREDGGGRGRFKSHSTAPARISDREKKAPLKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72660			P-loop containing nucleoside t...		Potri.003G063500 [exp]	0	1	Pt-DRG1.2
AT4G15000			Ribosomal L27e protein family ...		Potri.016G019000 [exp]	15.71	0.8005	RPL27.1
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Potri.019G131200 [exp]	26.26	0.7720	EIF2.2
AT1G67430			Ribosomal protein L22p/L17e fa...		Potri.008G175500 [exp]	35.07	0.7731
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Potri.014G192601 [exp]	36.46	0.7522
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.012G024400 [exp]	42.52	0.6832
AT5G62200			Embryo-specific protein 3, (AT...		Potri.001G193500 [exp]	42.66	0.6743
AT1G26880			Ribosomal protein L34e superfa...		Potri.017G082200 [exp]	54.90	0.7494	Pt-RPL34.5
AT2G21290			unknown protein		Potri.009G124700 [exp]	59.76	0.6995
AT5G67130			PLC-like phosphodiesterases su...		Potri.005G140100 [exp]	72.15	0.7414
AT3G24100			Uncharacterised protein family...		Potri.001G315400 [exp]	74.09	0.6932

Compare expression of checked genes

Potri.003G063500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.