Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72640 348 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G37660 50 / 6e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G16720 50 / 2e-06 HCF173 high chlorophyll fluorescence phenotype 173 (.1) AT5G02240 46 / 1e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G18810 42 / 0.0004 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G31530 42 / 0.0005 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G000400 [exp] 50 / 9e-07 AT1G16720 863 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.006G086800 [exp] 50 / 1e-06 AT2G37660 450 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G003500 [exp] 48 / 5e-06 AT1G16720 852 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.004G061200 [exp] 42 / 0.0004 AT4G18810 812 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016517 [exp] 367 / 5e-128 AT1G72640 309 / 3e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10000373 [exp] 250 / 1e-82 AT1G72640 207 / 8e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024383 [exp] 48 / 4e-06 AT2G37660 458 / 1e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10033322 [exp] 48 / 6e-06 AT1G16720 874 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Lus10034781 [exp] 48 / 7e-06 AT1G16720 870 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Lus10010846 [exp] 47 / 7e-06 AT2G37660 451 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029255 [exp] 44 / 0.0002 AT4G18810 851 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10007308 [exp] 43 / 0.0003 AT4G18810 850 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13460 [poplar] [flax] NAD_binding_10 NAD(P)H-binding
Representative CDS sequence Show only first row Show all	>Potri.003G063800.2 pacid=42785447 polypeptide=Potri.003G063800.2.p locus=Potri.003G063800 ID=Potri.003G063800.2.v4.1 annot-version=v4.1 ATGGCCACAGCTCTTCCTTCAACTGCTTTTTGCCAAACTTCTTTCACTTTCCCTTCTCAGAATCCATGCAAAGTTAAGAGTCCATCTCTCATATTCCGTA CCAAAAGTCATGGTCTTATTCGTTGTTCAGCCAAGAAGAAAATAAGCTTCGTGGACCAAATTCTTGATTACATTGAAGGGGGGCCCAAGTTAAGGAAATG GTACGGGGCACCTGATCTTCTGCCAAAAGATGGATCTGATACGGAAGATGAAGATGAATTGCCAGAAAAGAATGAAGTCAGAGACGCAGTTCTGGTCACA GATGGAGATAGCGAGATTGGTCAGATGATAATATTGTCATTGATTGTAAAAAAAGCTCGAGTTAAAGCATTGGTGAAGGATAAGCGGACTGCCATGGAAG CTTTTGGAACTTATGTTGAGTCAATGGCAGGAGATGCAAGTAGCAAGCCATTCCTTAAGAAAGCTCTGAGAGGTGTTCGTGCAATTATCTGCCCAAATGA AGGCTTCCTGTCTAATGGTGGGGACTTGCAAGGTGTAAAACATGTAATCCTCTTGTCCCAGTTATCTGTATATAGAGGTAGCGGTGGCATACAAGCTCTC ATGAAAAACAATGCAAGAAAATTGGCTGAGAAAGATGAATCAACGCTCGTAGCCTCGGGAATTCCTTACACCATCATCAGAGTTGGCATGTTGCAAGATA CACCTGGCGGCACACAAGGTTTCAGCTTTGAAAAGGGTAGTGCAGAGAAGGGGAGTCTTAGCAAAGAGGATGCTGCCTTCATCTGTGTGGAAGCTCTTGA CGTCGTCCCTCAAATAGGGTTTACATTCGAGGCGGTCAACGGAGAAGAGAAGGTTTCAGATTGGAAAGAGCGTTTAACCAGATTGATGGAGAAATCAGAG CAGCAGCATCCTTGA
AA sequence Show only first row Show all	>Potri.003G063800.2 pacid=42785447 polypeptide=Potri.003G063800.2.p locus=Potri.003G063800 ID=Potri.003G063800.2.v4.1 annot-version=v4.1 MATALPSTAFCQTSFTFPSQNPCKVKSPSLIFRTKSHGLIRCSAKKKISFVDQILDYIEGGPKLRKWYGAPDLLPKDGSDTEDEDELPEKNEVRDAVLVT DGDSEIGQMIILSLIVKKARVKALVKDKRTAMEAFGTYVESMAGDASSKPFLKKALRGVRAIICPNEGFLSNGGDLQGVKHVILLSQLSVYRGSGGIQAL MKNNARKLAEKDESTLVASGIPYTIIRVGMLQDTPGGTQGFSFEKGSAEKGSLSKEDAAFICVEALDVVPQIGFTFEAVNGEEKVSDWKERLTRLMEKSE QQHP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72640			NAD(P)-binding Rossmann-fold s...		Potri.003G063800 [exp]	0	1
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.001G351400 [exp]	2.00	0.9701
AT3G18890		AtTic62	translocon at the inner envelo...		Potri.009G111323 [exp]	2.00	0.9787
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Potri.017G118900 [exp]	3.87	0.9752
AT2G42220			Rhodanese/Cell cycle control p...		Potri.006G059200 [exp]	5.91	0.9688
AT1G53250			unknown protein		Potri.001G393700 [exp]	6.48	0.9426
AT1G22700			Tetratricopeptide repeat (TPR)...		Potri.013G114500 [exp]	6.70	0.9627
AT3G18890		AtTic62	translocon at the inner envelo...		Potri.004G150300 [exp]	7.48	0.9629	Pt-TIC62.1
AT3G59780			Rhodanese/Cell cycle control p...		Potri.013G128300 [exp]	8.36	0.9456
AT3G63510			FMN-linked oxidoreductases sup...		Potri.001G264900 [exp]	9.48	0.9475
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Potri.005G130400 [exp]	9.48	0.9609	Pt-PSBO.1

Compare expression of checked genes

Potri.003G063800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.