Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17450 1447 / 0 B-block binding subunit of TFIIIC (.1.2) AT1G59453 1338 / 0 B-block binding subunit of TFIIIC (.1) AT1G59077 519 / 5e-165 unknown protein AT1G58766 519 / 5e-165 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G170001 [exp] 0 / 1 AT1G17450 75 / 2e-16 B-block binding subunit of TFIIIC (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037675 [exp] 1520 / 0 AT1G17450 1340 / 0.0 B-block binding subunit of TFIIIC (.1.2) Lus10015661 [exp] 635 / 0 AT1G17450 598 / 0.0 B-block binding subunit of TFIIIC (.1.2) Lus10000374 [exp] 367 / 3e-114 AT1G17450 334 / 2e-103 B-block binding subunit of TFIIIC (.1.2) Lus10000369 [exp] 345 / 3e-105 AT1G17450 294 / 2e-88 B-block binding subunit of TFIIIC (.1.2) Lus10015660 [exp] 258 / 1e-77 AT1G17450 205 / 7e-60 B-block binding subunit of TFIIIC (.1.2) Lus10022089 [exp] 254 / 3e-75 AT1G59077 210 / 1e-62 unknown protein Lus10022088 [exp] 227 / 1e-67 AT1G17450 205 / 6e-61 B-block binding subunit of TFIIIC (.1.2) Lus10006533 [exp] 144 / 2e-37 AT1G17450 101 / 1e-23 B-block binding subunit of TFIIIC (.1.2) Lus10000370 [exp] 102 / 7e-25 AT1G59453 64 / 1e-12 B-block binding subunit of TFIIIC (.1) Lus10015659 [exp] 0 / 1 AT1G17450 111 / 3e-36 B-block binding subunit of TFIIIC (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G064000.6 pacid=42784705 polypeptide=Potri.003G064000.6.p locus=Potri.003G064000 ID=Potri.003G064000.6.v4.1 annot-version=v4.1 ATGGACAATCTCATCTCTTCAGCTCTCGAAGAGATTTGTTACCATGGTCCCAGCGGAGTCTCCCTATCCTCCCTCTGGTCGACATTAACGCCAAAACCTT CTCCTTCAGTCAAAGCCTCTCTATGGACAAACCTGCTTTCAATACCTTCTCTTCAATTCACTGTTCCTGGATACGATCTTCCGTTTAGTGCTGACGACAG TAAAATCAAGCGTTGTGAACACGCCGAGAAGCTCGGTTTGAAAATTGTAGCCAAAGAGCACCTTAGGGATTCCTTTGTTGGTCTTTACGACACTCCGTCT ACTGGAATTTCTTCTAATCAACGCAATGCTCTTAAACGACTTGCCGTTGCTAGAGGGAATGGGATTACACAAAACGCACTGGCAAAGGACTTGAAGGTAG AAAATAATAACTTTTTTTATGTGGTGAGGAGTCTAGAATGCAGAGGGTTGATTGTGAGACAACCTGCTGTTGTGAAGATGAAAGATGTGAGTGTCACTAC CAATATGTTGTATTTATATCGTCATGCGAAGCATTTAGGTGTTCAACAGAGGTTTGAGATTAATGAGGAATGTGTGGAGGAAACTGATATACGGGGGGAT GGTTTTGATGGAGAGTCTTCTTCTAAAGTGCTTGTGAGGGATTATTTACCGGCAATAAAAGCCATCTGTGACAAACTTGAAAAAGCCAATGACAAGGTCC TTGTCATTTCAGATATCAAACAGGATCTTGGTTACAGTGGAACTAAAGGACACAAAGCTTGGAGAAATATATTGCGTAGGTTGAAAGATGCCTGTGTTGT CGAGGAGTTTGAAGCTAAAGTTGACAGGAAGGTTGAGTGTTGCCTACGATTGTTACAGGAGTTTTCCCCTAATAATTTTGAGCCCAAAACTCGTGGGTGT GGCGAAGATTGTGACAACAAAGTGCTAGTGAAATTTGGAAAGATGATTCAACAAACTGATCAACTTGTAGAACTTTCCCTTGACCAGCAAATTTATGATT TGATTGATGCTGCAGGATCCAAGGGGGCTACTTTTAGAGAGGTGGGTAGGAGGCTGGGACTTGATAAGAAAAGAAACTATCCTCGGTTTGAAAATATGTT GTCTATGTTTGGGATGCACAGGCAGGCAGAAATCAACAAAAGAACTCCAGAATATCGAGTTTGGACTGCTGGAAATTCAAATTCTGACACACCAATTGCA GTTCTTTGTAAATCCAAAGCTGTCCTTGGTGACAATAATATTTCTGATTTGAATACTAGCAATGTTGATGTACCTGTCAGATCTGATGTAGGTTTATTAG AGCATGGTAATTCAACCTTGGGAATTTATTCTGCTTCGTCTGGAAAACTGAATGAGGAAATTGATACTGACGTATATAGTGGCTCACCTGAGGATGGCAA AACTAACCATATGCAGCTCTGTCCTGGCAATGTGCCAGACTCACTCAACAGGCCAAGAAGTACAGCTTCCAATGCCGAAATTTATATAGAGAGCATGCAA ATGGAACCAGATGGTGCTTCATCAGTTAAAACAGCACCAACTTTGTTGACGCCACATCATTCTGGATCCTCTCAGACATATCCGCACATGCCTTTAACGG CTGATAGCGCCTTCAGGGAGAAGAAAATTCTTGAATGGTTACAGGACAAGATATTCATTTTGAAACCTGAGATACACAAGTGGCTTAAGAGTCTTGAGGA CAAGGGTACAACAATTGACAGGAAGACTGTTGATCGAATTCTATATAAGCTTGAGCGGCAAGGACACTGCAAATTGCAGCACATTAATGTCCCTGCTGTC ACAAATTGCGCCCGAGATCGTACCATCCTAGTGGTTCTTCACCCATCTGTTCAAGGTTTTCCTCCTGAACTAATGGGTGAAATTCATGATAGAGTGAGGG TTTTTGAAAAGCAAAGTCGTGGAGAGGGGTCATCCAGGCTGAAGATTAAGGAATCAGTTCCAGTGTTAAATAGTGTAACAAGAACTCAGATGCATGTAGG TTCAGAAGAAAAGACTGCTAAATGGGAAGCCATGCGAGCCAATGGGTTTGTGTTAGCAAAAATGGGCCGTGCTCGGCTGCTTCATACTTTTTTGTGGAAT CATCTAAGTAGTTTGCCTGAATGGAACGGTGATTTATCATCTGGGGCATATTCATATGCATACAAGTTGTTTGAATTAGAGTCTGTTATTGATGCCATTC CAATTGAGCTGTTCTTACAAGTGGCAGGATCTGCTCAAAAGTATGATGATATGATTGAAAAGTGCAAGAGGGGTTTGCGTCTCTCTGATCTTCCTATTGA AGAATACAGAAACTTGTTGGATAGTAGGGCCACAAACAGATTATCATTGATCATTGACATTTTACGTCGATTGAAGCTGATTCGTTTAGTACGTGATGGG CATTCAGAGGATGGTGTAAAGGCTCCACATGCCAGATCCAGACATGCAATGGAGCTTAAACCTTATGTTGAAGAACCACTATCAATAGTAGCAGTATCTA ATTTAAGATGTCTTGACCTTCGTCCAAGAATAAGACATGATTTTTTTCTGTTAAACAGAGAAGCTGTTGATGAGTATTGGAAAACTCTGGAGTACTGCTA TGCTGCTGCTCATCAAATAGCTGCTAAACATGCATTTCCTGGATCTGTTGTACCTGAGGTTTTCCATCACCGATCATGGGCCTCGGTTCGAATTATGTCT TCTGATCAGCGTGCTGAGCTCCTAAAACGGATAGTGATGGATGATCAGAGCAAAACTCTGTCGTATAAAGATTGTGAGAAGATTGCAAAGGATCTTAATT TGACTTTACAGCAGGTACTTCGTGTCTATTATGATAAGCACCATCGTCGTCTTAATAGATTTCAAGGTGTTAAAAATGCAAGTGAGGAGTGTCAGCTGCC ACAAAAGATACAACCTTCATCCTCTAAGAAAAGAAAGAAACCCTTGGGATCTAGCTCAACAAAGCGTGGCAGAGGTGATAACATAAATGCACAGTTGGAC AGGCAGAGGCTTAGCAAATTACCTGATGCTGTTGACCAATTCACAGTAGAAAAAGATCTTTCTTCTTCTGAACATGAGCATTTGCCAGAACTCCAGGATG ATGATCACCTCGATATTCTGGAAGGACCAGGACTATCTGAAGATGAGGAATGTCCTTCTGTAATCAACCATTGTGCTTTTTCAAAGATGAAGCCAACACG CCGATCCAGGTTTCCATGGACAGATGAAGCTGATAGGCAATTGGTGATCCAATATGCAAGACATCGTGCAGTTCTTGGGCCAAAGTTTCACCGTGTCGAT TGGAATGCACTTCCTGACTTACCAGCAGAACCTGGAATTTGCTCGAGAAGGATGTCATCCCTGTTTAGGCAAAACACAAAATTTAGACCAGCTGTAATGA AGCTCTGCACCATGCTTGGTGAGCGCTATGCAAAGCACCTGGAGAGAACCCAGAACAGGTTTCTTAACAAAAATGACTGCAGAGGTCTCTTGCGATGCTC TGCCAGTGAAGGCCTTCATGGGAAGTTCTCCAATGCTGTTGAATGTGATGAAGAAGCAGGTTGTGAGGAAGCGTGTTGGGATGATTTCAAGGAAAAAAGT ATTAGAAAAGCCTTAGAGGATGTTTTCCACTACAAGCAAGTGAGTAAATTGGATATCTCTAAGAGAGTTGGATCTGGCTCTGAAGAATGGTGTGATTTAA ACACAAATGTTGAAAGACATAATCGAATGGAATCTGAAACGGTTCTGTCAAATACTCCCAAGAAGGACATGCAGAAACTTGGCATTGGAAAACATAAAGA TTCTGCTCAAAGATCAAGACAATATCATCTTCATCAGAAGTTTACTAAGCTTTTAGACGAAGGGACTAGTGTTCGTAGACAAGTGCACAAGTCATTGGCT ATTTCTAATGCTGTAGAACTATTAAAGCTTGTCTTCTTGAGCACCTCAACAGCACCAGAGCTGCAAAATCTTTTGGCAGAAACTTTACGGCGTTATTCTG AACACGATCTGTTTGCAGCTTTTAGCTACCTTAGAGTGAAAAAAATCTTGATTGGGGGCAGTGGTGGTCAACCTTATGTGCTATCTCAACAGTTCCTGAC CAGTGTTTCTAAGTCTCCATTTCCATCTAATGCTGGAAAGAGGGCTGCTAAACTTTCCAGCTGGCTTCATGAAAGAGAAAAGGACCTTGTGGAAGGAGGG GTTGATCTTACTGCGGATTTGCAGTGTGGTGACATTTTTCAGTTGTTTGCTCAAGTTTCTTCGGGTGAGTTGTCCATTTCTCCATGCATGCCAGTTGAAG GAGTGGGAGAGGCCGAAGACCTAAGAAGCTTGAAACACAAAAATAAGGAAGATGAATTTTGTGATTGTGATAGGGGCAAAAAATTGAAATCACTGGCAGA TAGTGAACTCTTTTCTCGCAGAGAAAAGGGCTTTCCTGGTATTGTGGTGTCTCTGCATCGTGCAGCAATGCAAACCATTAATTCTCTAGATTTGCTCAAA GATGGGGAGACTTGTAGCGGTGAACTTCGTTGGAATGATATGCTCAATTCTGGTTTGGGTCAGGAAATCAGCTGGAGTACATCTTGTCACAACAATGGGC AGGAAATTCTGAATTTTGGCAGCACTATCCCTACAGCAGCATGGCCCAGCAAGGCACCTTGGGAGGCAATGACATGCTATTTGGAATATCTGGTGCCAAA ACCTTATGATCGAAATCAAATGAATCCTGATGTCTTTAGGACCATTTATGCTGCTATTCAGAAGGCTGGTGACCAGGGTTTGAGCATGGAAGAAATTTCC CAAGTTACAGGAGAAAATATGCATATACAGATAATTGATGTGCTCCAGACATTTGGACGAGTTTTGAAGGTCAATGCTTATGAATCTGTTCGTGTGGTTG ATGCATTATATCGTTCCAAGTACTTCCTGACCTCAGTGGCTGGTTCTCGTCAAGATCTGACTGCACATTCAGTGACAAAGTCCTTGGAGAGCATTGATGA TGGCCATCTAACTTTGCAGCCTGAAAATTATGTAGTTGGTACTAGTTCACAAAGGGAAGTGGTCATGGATAATCATGATGTGCACAAAGTTACCATTCTT AATCTTCCTGGAGAGTTTGCATCTTTGAATGAAACCCAAAATAGCATTGCACATGAAAGTCATTTACAAGAAAATGTAATTTCACCAGAACAGGTTATTG ACGGTGAAACCTCATCTGGTGAGATATGTATGCCAATATTGCCATGGATAAATGGAGACGGGACTATGAATAAGGTTGTCTACAATGGACTTGTACGTCG TGTTCTTGGTACTGTGATGCAAAATCCTGGTATAACAGAGGAGAATATTATACTCCATGTTGATGTATTAAATCCCCAGAGTTGTAGAAATCTACTGGAG TTAATGATTTTGGATAAACACCTCATTGTGAGGAAGATGCACCAGTCTACATCAAGTGCCCCCCCTGCCTTACTGAGAACTCTCCTTGGGAAAAGATTCA GAGAACCAAAGTTGGTATACCGCGAGCATTTCTTTGCCAATTCTATGAGTGCAGCCCTGCTGTAG
AA sequence Show only first row Show all	>Potri.003G064000.6 pacid=42784705 polypeptide=Potri.003G064000.6.p locus=Potri.003G064000 ID=Potri.003G064000.6.v4.1 annot-version=v4.1 MDNLISSALEEICYHGPSGVSLSSLWSTLTPKPSPSVKASLWTNLLSIPSLQFTVPGYDLPFSADDSKIKRCEHAEKLGLKIVAKEHLRDSFVGLYDTPS TGISSNQRNALKRLAVARGNGITQNALAKDLKVENNNFFYVVRSLECRGLIVRQPAVVKMKDVSVTTNMLYLYRHAKHLGVQQRFEINEECVEETDIRGD GFDGESSSKVLVRDYLPAIKAICDKLEKANDKVLVISDIKQDLGYSGTKGHKAWRNILRRLKDACVVEEFEAKVDRKVECCLRLLQEFSPNNFEPKTRGC GEDCDNKVLVKFGKMIQQTDQLVELSLDQQIYDLIDAAGSKGATFREVGRRLGLDKKRNYPRFENMLSMFGMHRQAEINKRTPEYRVWTAGNSNSDTPIA VLCKSKAVLGDNNISDLNTSNVDVPVRSDVGLLEHGNSTLGIYSASSGKLNEEIDTDVYSGSPEDGKTNHMQLCPGNVPDSLNRPRSTASNAEIYIESMQ MEPDGASSVKTAPTLLTPHHSGSSQTYPHMPLTADSAFREKKILEWLQDKIFILKPEIHKWLKSLEDKGTTIDRKTVDRILYKLERQGHCKLQHINVPAV TNCARDRTILVVLHPSVQGFPPELMGEIHDRVRVFEKQSRGEGSSRLKIKESVPVLNSVTRTQMHVGSEEKTAKWEAMRANGFVLAKMGRARLLHTFLWN HLSSLPEWNGDLSSGAYSYAYKLFELESVIDAIPIELFLQVAGSAQKYDDMIEKCKRGLRLSDLPIEEYRNLLDSRATNRLSLIIDILRRLKLIRLVRDG HSEDGVKAPHARSRHAMELKPYVEEPLSIVAVSNLRCLDLRPRIRHDFFLLNREAVDEYWKTLEYCYAAAHQIAAKHAFPGSVVPEVFHHRSWASVRIMS SDQRAELLKRIVMDDQSKTLSYKDCEKIAKDLNLTLQQVLRVYYDKHHRRLNRFQGVKNASEECQLPQKIQPSSSKKRKKPLGSSSTKRGRGDNINAQLD RQRLSKLPDAVDQFTVEKDLSSSEHEHLPELQDDDHLDILEGPGLSEDEECPSVINHCAFSKMKPTRRSRFPWTDEADRQLVIQYARHRAVLGPKFHRVD WNALPDLPAEPGICSRRMSSLFRQNTKFRPAVMKLCTMLGERYAKHLERTQNRFLNKNDCRGLLRCSASEGLHGKFSNAVECDEEAGCEEACWDDFKEKS IRKALEDVFHYKQVSKLDISKRVGSGSEEWCDLNTNVERHNRMESETVLSNTPKKDMQKLGIGKHKDSAQRSRQYHLHQKFTKLLDEGTSVRRQVHKSLA ISNAVELLKLVFLSTSTAPELQNLLAETLRRYSEHDLFAAFSYLRVKKILIGGSGGQPYVLSQQFLTSVSKSPFPSNAGKRAAKLSSWLHEREKDLVEGG VDLTADLQCGDIFQLFAQVSSGELSISPCMPVEGVGEAEDLRSLKHKNKEDEFCDCDRGKKLKSLADSELFSRREKGFPGIVVSLHRAAMQTINSLDLLK DGETCSGELRWNDMLNSGLGQEISWSTSCHNNGQEILNFGSTIPTAAWPSKAPWEAMTCYLEYLVPKPYDRNQMNPDVFRTIYAAIQKAGDQGLSMEEIS QVTGENMHIQIIDVLQTFGRVLKVNAYESVRVVDALYRSKYFLTSVAGSRQDLTAHSVTKSLESIDDGHLTLQPENYVVGTSSQREVVMDNHDVHKVTIL NLPGEFASLNETQNSIAHESHLQENVISPEQVIDGETSSGEICMPILPWINGDGTMNKVVYNGLVRRVLGTVMQNPGITEENIILHVDVLNPQSCRNLLE LMILDKHLIVRKMHQSTSSAPPALLRTLLGKRFREPKLVYREHFFANSMSAALL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17450			B-block binding subunit of TFI...		Potri.003G064000 [exp]	0	1
AT1G27900			RNA helicase family protein (....		Potri.010G057200 [exp]	1.73	0.8562
AT5G22450			unknown protein		Potri.004G203500 [exp]	2.23	0.8682
AT3G17450			hAT dimerisation domain-contai...		Potri.002G188400 [exp]	2.82	0.8600
AT1G09060			Zinc finger, RING-type;Transcr...		Potri.005G027000 [exp]	3.60	0.8069
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Potri.008G035200 [exp]	4.89	0.8497
AT5G67570		EMB246, DG1, EM...	EMBRYO DEFECTIVE 246, embryo d...		Potri.007G004900 [exp]	5.47	0.8395
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.014G121601 [exp]	9.48	0.8160
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.004G104201 [exp]	11.48	0.8154
AT1G13030			sphere organelles protein-rela...		Potri.008G185100 [exp]	12.24	0.8054
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Potri.011G049700 [exp]	12.40	0.8235

Compare expression of checked genes

Potri.003G064000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.