Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17440 266 / 6e-80 CKH1, TAF12b, EER4 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2) AT3G10070 137 / 2e-34 TAF12, TAFII58 TATA-ASSOCIATED FACTOR II 58, TBP-associated factor 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G169900 [exp] 362 / 2e-117 AT1G17440 267 / 2e-80 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2) Potri.006G083500 [exp] 136 / 4e-34 AT3G10070 298 / 3e-95 TATA-ASSOCIATED FACTOR II 58, TBP-associated factor 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006528 [exp] 263 / 2e-80 AT1G17440 280 / 4e-86 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2) Lus10003250 [exp] 134 / 4e-33 AT3G10070 325 / 8e-105 TATA-ASSOCIATED FACTOR II 58, TBP-associated factor 12 (.1) Lus10001251 [exp] 119 / 1e-30 AT1G17440 115 / 2e-29 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2) Lus10035601 [exp] 124 / 2e-29 AT2G36310 536 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [poplar] [flax] Histone PF03847 [poplar] [flax] TFIID_20kDa Transcription initiation factor TFIID subunit A
Representative CDS sequence Show only first row Show all	>Potri.003G064100.2 pacid=42787150 polypeptide=Potri.003G064100.2.p locus=Potri.003G064100 ID=Potri.003G064100.2.v4.1 annot-version=v4.1 ATGGCAGAAAATGCAGCTGCTGCTGCTGCAGCCTCTTCGCCTAAACCTCTCCCTTCTCCGAATACAATTATAGACCCATCGTCACAACCACAACCACAAC CACAACAAGCAGCAACCTTGACGAACACTAACACGACGAACTTAACACAGACACAAAACCTATCCAATTTACCTCAAAACACACATATCTCTTCCTCTCC TTCACTGGACCACTCCCAAATCTCCTCTTCGCCTTCTCTCCAACCTCCACAACAGCAACAGCAACCGGTTTTGCAGCAACAACCGCAGCAGCAGAATGTC ACCGCAATGTCAGGCTATCAAATCCAACAAACCCTTCAAAGATCTCCTTCCATGTCACGCTCGAGCCAAATTAACCAACAACAACAGAACCAATACGGTG GCGTTTTGAGGCAGCAGCAGCAACAGGGCTTATACGGGCAAATGAATTTTGGTGGGTCTGCTTCAATTCAACAGAATTCGCAGCAGAATCAACAATTGGG TGGTGCCAATTTGTCTCGCTCAGCACTTCTCGGCCAGACTGGCCACCTTCCTATGTTCACCGGCGCTGCTGCTGCTGCTGCCGCCGCTCAGTTGAACTTG CCCTCACAATTGTTGGCTTCACCGAGGCAGAAAGCTGGGTTAGCCCAAGGGTCCCAATTCCATTCTGGTGATTCTCCGGGGCAGTCCTTGCAGGGGATAC AAGCAATGGGAGTGATGGGATCATCGCTAAATTTGTCACAACTAAGACCTAATGGGGCACTTGCATATGCTCAACAGCGAATGAGTGCAGGGTCAATGAG GCAGCAACTGGTGCAACAAAATTCGCTCACCTCTCAGGTTCAAAGCCTACAAAGAACACAATCACTGGCATATATGAACCATCAGATGTCAGGGCTGGCT CAGAATGCACAGCCAACTATGATGCAGAGCTCTCTGTCACAGCAACAGTGGTTGAAGCAAATGCCAACTATGTCTGGTCCTGCCTCACCTTCACTCCATC TTCAACAGAGGCAGTCACAGGCTTTCTTGCAGCAGCAATTGGCTTCATCTGGTCAACTGCACCAGAATTCAATGGCACTGAACTCACAACAGTTATCCCA GCTGGTACAGCAGCAGCCCCAAATCGGACACCAACAACTACAGCAGCAGCAGCAGCAGCAGCAACTACTACAGCAACAGCAACAGCAACAGCAGCAGCAA CTACTACAGCAACAGCAACAGCAACAGTTGCAACAAGTGTCTTTGCATCAGCAGCAGCAACATCAACAACAATCTCCAAGGATGCCAGGACCCCCAGGCC AGAAAACTCTTAGTTTGACAGGATCACAGCCAGATGCAACAGCATCTGGAACAACTACACCAGGGGGGAGTTCAAGCCAAGGAACAGAAGCAACTAATCA ACTTCTCGGGAAGAGAAAGATACAGGACTTGGTTTCACAGGTGGATTCACATGGAAAACTAGATCCTGAAGTTGAAGAACTTTTTCTGGAAATTGCCGAT GACTTTATTGATTCAGTGACCGCATTTGCATGCAGTTTGGCTAAGCATCGGAAATCTTCAACTTTAGAGTCCAAAGATATATTGCTGCACTTAGAGAAAA ACTGGCATTTGACAATTCCTGGATTTTCATCGGAAGAGAGGAAGCACCAAAGTAAACCTTTGCCTAGTGATCTCCACAAGAAGCGTCTTGATATGATTCG TGCATTGATGGAGTCCTCTCAGTCTGAAGAAAATAATATCAATCCTAAAGAGATGATAAGACAAGGACATGGCAACCCAGCTGTTACTAATCACCTGATA AGACCTTCACCAAGTTCAGAGCAGTTGGTTTCGCAGTCAACTGGTTCTCCAATGGTGCAGCAGATTACACGGTTTTAA
AA sequence Show only first row Show all	>Potri.003G064100.2 pacid=42787150 polypeptide=Potri.003G064100.2.p locus=Potri.003G064100 ID=Potri.003G064100.2.v4.1 annot-version=v4.1 MAENAAAAAAASSPKPLPSPNTIIDPSSQPQPQPQQAATLTNTNTTNLTQTQNLSNLPQNTHISSSPSLDHSQISSSPSLQPPQQQQQPVLQQQPQQQNV TAMSGYQIQQTLQRSPSMSRSSQINQQQQNQYGGVLRQQQQQGLYGQMNFGGSASIQQNSQQNQQLGGANLSRSALLGQTGHLPMFTGAAAAAAAAQLNL PSQLLASPRQKAGLAQGSQFHSGDSPGQSLQGIQAMGVMGSSLNLSQLRPNGALAYAQQRMSAGSMRQQLVQQNSLTSQVQSLQRTQSLAYMNHQMSGLA QNAQPTMMQSSLSQQQWLKQMPTMSGPASPSLHLQQRQSQAFLQQQLASSGQLHQNSMALNSQQLSQLVQQQPQIGHQQLQQQQQQQQLLQQQQQQQQQQ LLQQQQQQQLQQVSLHQQQQHQQQSPRMPGPPGQKTLSLTGSQPDATASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSHGKLDPEVEELFLEIAD DFIDSVTAFACSLAKHRKSSTLESKDILLHLEKNWHLTIPGFSSEERKHQSKPLPSDLHKKRLDMIRALMESSQSEENNINPKEMIRQGHGNPAVTNHLI RPSPSSEQLVSQSTGSPMVQQITRF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.003G064100 [exp]	0	1
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Potri.006G135500 [exp]	2.44	0.8741
AT5G05460		AtENGase85A	Endo-beta-N-acetyglucosaminida...		Potri.010G184300 [exp]	2.44	0.8641
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.001G169900 [exp]	3.31	0.8830
AT4G25620			hydroxyproline-rich glycoprote...		Potri.012G144200 [exp]	4.58	0.8493
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.011G118800 [exp]	7.00	0.8609
AT5G13660			unknown protein		Potri.006G082800 [exp]	8.06	0.8646
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Potri.002G149800 [exp]	8.24	0.8738
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.008G114900 [exp]	8.48	0.8573
AT5G13950			unknown protein		Potri.002G237800 [exp]	10.81	0.8740
AT1G21650		SECA2	Preprotein translocase SecA fa...		Potri.002G078000 [exp]	12.36	0.8597

Compare expression of checked genes

Potri.003G064100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.