Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45540 174 / 1e-45 Protein of unknown function (DUF594) (.1) AT5G45460 168 / 7e-44 unknown protein AT5G45470 157 / 5e-40 Protein of unknown function (DUF594) (.1) AT5G45480 152 / 2e-38 Protein of unknown function (DUF594) (.1) AT5G45530 139 / 3e-34 Protein of unknown function (DUF594) (.1) AT4G19090 122 / 1e-28 Protein of unknown function (DUF594) (.1) AT4G19080 114 / 1e-27 Protein of unknown function (DUF594) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G059200 [exp] 491 / 2e-165 AT5G45540 200 / 3e-54 Protein of unknown function (DUF594) (.1) Potri.015G107800 [exp] 469 / 3e-156 AT5G45540 213 / 8e-59 Protein of unknown function (DUF594) (.1) Potri.015G114101 [exp] 466 / 2e-155 AT5G45540 177 / 3e-46 Protein of unknown function (DUF594) (.1) Potri.015G107900 [exp] 460 / 3e-153 AT5G45540 186 / 3e-49 Protein of unknown function (DUF594) (.1) Potri.015G113600 [exp] 462 / 5e-153 AT5G45540 190 / 2e-50 Protein of unknown function (DUF594) (.1) Potri.015G116100 [exp] 461 / 7e-153 AT5G45540 192 / 3e-51 Protein of unknown function (DUF594) (.1) Potri.015G107500 [exp] 454 / 9e-151 AT5G45540 179 / 4e-47 Protein of unknown function (DUF594) (.1) Potri.015G113700 [exp] 455 / 1e-150 AT5G45480 181 / 2e-47 Protein of unknown function (DUF594) (.1) Potri.015G116201 [exp] 451 / 9e-150 AT5G45540 203 / 2e-55 Protein of unknown function (DUF594) (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04578 [poplar] [flax] DUF594 Protein of unknown function, DUF594 PF13968 [poplar] [flax] DUF4220 Domain of unknown function (DUF4220)
Representative CDS sequence Show only first row Show all	>Potri.003G064200.2 pacid=42787523 polypeptide=Potri.003G064200.2.p locus=Potri.003G064200 ID=Potri.003G064200.2.v4.1 annot-version=v4.1 ATGTGGAGATCGATGACTATAAAAATGCCACACTTTCCTGGACAACTCAAGAAACTTTGGAGCAAATGGGAGATTGTAGGGATGGTTTTATCTAGTCTTT TTCTGCAAATCCTTCTCATCATGTTTGGTTCTCGGAGGAAGCGCATTACAAGAATCTGGATCAGAATTCTTGTTTGGTCTTCTTACTTGCTGGCAGACAT GGTAGCCACTGTTGCTTTGGGTGTTCTTTCCAGGAGCCAGCTTGGAGAAATGGGTGACATTCAGTTTGCAGAAGAAAACAGTTCACTTCGTGCGTTTTGG GCACCTTTCCTTCTCGTGCACCTTGGTGGCCCAGACACAATCACAGCTTTCTCCATCGAAGACAATGAGCTGTGGTTGAGGCATTTGCTTAACCTTCTAG TTCAAGGTTCTGTGGCTTTTTATGTTGTCTTACAGTCTTGGGATTTCAGTGTCCTCTCATTTATAACAATTTTTATGTTATTTTCCGGAATTGCCAAGTA CGGGGAGAGGACTTGGGCGCTCAGATCTTCAAGTACCGAGAACATCAGAAACTCTTTGCTCTCAACCCCGCCTCGCCTGCGATTAGATACAAAGAGTATA ATGGTTGTTCCGCGAGGACACCATATTCCTGATCAGACCAACTATCTTCATCAAGCTTATTATCTATTCAAGATGTCCTTGTATCTCTTTGAAAATCTTA TCCTCAGCCTTACTGAACTGAAGGACAGCCACTCTATCATTTCTTGCCAATCATCAAAGGATGCTTTCAAGTTGGTAGACTTGGAGCTCGGATTCATCTT TGACAGACTTTATACTAAGGCTCCCATAGTTTATTCCCGAAAAGGAGTTTTTCTTCGCTTCCTTACCTTCTCCTCCTCTTTCATTACACTAGTTTCCTTC TCATTCTTCGTTGACAAGCATCGCTGCTCACCCATCAATGTTGCTACAACTTATCTGTTACTAGCTGGAGCTCTTGGTTTGGAGGTTTATGCAATGTTAC AACTCGTTTTCTCTGATTGGACAATGATTTGGTTAACTAGGTTTACAAGCACACCAAGTAATCCCATTGGTAATGCCATTTACTCCCTTCGTGCATATTT CGCCAATGAAAAGAGGTGGTCAGGGTCCATGGCACAGTGCAACCTGATAAGTTCTAGCTTTGCAATCAAAACAATCAAGAGTTTGAGCAAGTTTATGGGA ATCGATCAAGAAACATTGAAGCACTTGCACGTAAGTTGGGAGCATACAAATGACAATTTGAAAGATCTGATCTTCGAAAATCTTCTTGAGAAGGGGAATG AGATTATAGAGCATCTCCAAGATAAGGAGAACCGACGTACTAGACTACTAGCTCAAAGGGGGGATGGTGTGCTTGAGAAGATGAAAAGGCTAGAAGAATT CCGCTGGTGCACAACGTCTGTGGAATTTAACCAAAGCCTCTTTATTTGGCACATTGCTACTGATCTTTGCTACTATGTTGATCAGAAGTTCCATTCGAAA CAAAGGATGTCTAAATTACTATCTGATTACATGTTCTATCTTCTGGTCGTGAAACCAAATATGCTTCCCAAGAGAATTAGTGATTCAGGGTCTAGATATC GAGATGCGAGTGACGAGGTGGAGAGATTTTTCCAAGTAAGAAAGAAAGAGCCATCAAATGGTACTGCAAGGGAAGCTCGCATGACATTGTTCCAAGCGAA GCAGGAGGAGTTGGAAGATGCCATAGCAATTCCTATTGATACGACGCCAACAATTCCTGGAGCATATGGAAGCAGCAAGTACCTGCTCGTCCATGGGTGT AAGCTAGCTCAACAATTGCAGAAGTTGGAAGCAGAGAAGTGGAAGGTCATAAGTGAGGTTTGGGTTGAAATGCTCACTTACGCTGCAGGTCATTGCGAAT GGAGAGACCATGCCCAGCAACTTAAAAGTGGTGGAGAGCTACTCACTCATGTCCGACTTCTTATGGCACACCTAGGTTTAAGCCAACAATATCAGGAAAT TCTTCTTAGTTGA
AA sequence Show only first row Show all	>Potri.003G064200.2 pacid=42787523 polypeptide=Potri.003G064200.2.p locus=Potri.003G064200 ID=Potri.003G064200.2.v4.1 annot-version=v4.1 MWRSMTIKMPHFPGQLKKLWSKWEIVGMVLSSLFLQILLIMFGSRRKRITRIWIRILVWSSYLLADMVATVALGVLSRSQLGEMGDIQFAEENSSLRAFW APFLLVHLGGPDTITAFSIEDNELWLRHLLNLLVQGSVAFYVVLQSWDFSVLSFITIFMLFSGIAKYGERTWALRSSSTENIRNSLLSTPPRLRLDTKSI MVVPRGHHIPDQTNYLHQAYYLFKMSLYLFENLILSLTELKDSHSIISCQSSKDAFKLVDLELGFIFDRLYTKAPIVYSRKGVFLRFLTFSSSFITLVSF SFFVDKHRCSPINVATTYLLLAGALGLEVYAMLQLVFSDWTMIWLTRFTSTPSNPIGNAIYSLRAYFANEKRWSGSMAQCNLISSSFAIKTIKSLSKFMG IDQETLKHLHVSWEHTNDNLKDLIFENLLEKGNEIIEHLQDKENRRTRLLAQRGDGVLEKMKRLEEFRWCTTSVEFNQSLFIWHIATDLCYYVDQKFHSK QRMSKLLSDYMFYLLVVKPNMLPKRISDSGSRYRDASDEVERFFQVRKKEPSNGTAREARMTLFQAKQEELEDAIAIPIDTTPTIPGAYGSSKYLLVHGC KLAQQLQKLEAEKWKVISEVWVEMLTYAAGHCEWRDHAQQLKSGGELLTHVRLLMAHLGLSQQYQEILLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45540			Protein of unknown function (D...		Potri.003G064200 [exp]	0	1
AT2G20362			unknown protein		Potri.002G256100 [exp]	4.89	0.8953
AT5G42146			unknown protein		Potri.004G167800 [exp]	7.00	0.9255
AT1G77700			Pathogenesis-related thaumatin...		Potri.001G210400 [exp]	16.06	0.9070
AT1G07370		ATPCNA1, PCNA1	proliferating cellular nuclear...		Potri.010G193950 [exp]	17.32	0.9026
AT5G41470			Nuclear transport factor 2 (NT...		Potri.002G070800 [exp]	22.36	0.9024
AT3G55550			Concanavalin A-like lectin pro...		Potri.006G144850 [exp]	24.55	0.7651
AT2G16050			Cysteine/Histidine-rich C1 dom...		Potri.004G209200 [exp]	25.39	0.9007
AT1G68585			unknown protein		Potri.015G053600 [exp]	26.45	0.8127
					Potri.016G136800 [exp]	27.87	0.9005
AT1G63310			unknown protein		Potri.001G452900 [exp]	29.79	0.9005

Compare expression of checked genes

Potri.003G064200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.